Pongo abelii (Sumatran orangutan): 100458625
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Entry
100458625 CDS
T01416
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pon
Pongo abelii (Sumatran orangutan)
Pathway
pon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100458625 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pon03019
]
100458625 (XAB2)
03041 Spliceosome [BR:
pon03041
]
100458625 (XAB2)
Messenger RNA biogenesis [BR:
pon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100458625 (XAB2)
Spliceosome [BR:
pon03041
]
Complex B
Other components
Prp19-related factors
100458625 (XAB2)
Complex C
100458625 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_1
TPR_MalT
TPR_21
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
100458625
NCBI-ProteinID:
XP_024093811
Ensembl:
ENSPPYG00000009478
UniProt:
H2NXA7
LinkDB
All DBs
Position
20:complement(7599368..7609632)
Genome browser
AA seq
855 aa
AA seq
DB search
MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGVFWQTWKDFEVRHGNEDTI
KEMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPLRAQSKILFVRSDASREELAELAQQVNPEEIQLGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtaatggcgcgactctcgcggcccgagcggccggaccttgtcttcgaggaagag
gacctcccctatgaggaggaaatcatgcggaaccagttctctgtcaaatgctggcttcgc
tacatcgagttcaaacagggcgccccgaagcccaggctcaatcagctatacgagcgtgca
ctcaagctgctgccctgcagctacaaactctggtaccgatacctgaaggcgcgtcgggca
caggtgaagcatcgctgtgtgaccgaccccgcctatgaagatgtcaacaactgtcatgag
agggcctttgtgttcatgcacaagatgcctcgtctgtggctagattactgccagttcctc
atggaccaggggcgcgtcacacatacccgccgcaccttcgaccgtgccctccgggcactg
cctatcactcagcactctcgaatttggcccctgtatctgcgcttcctgcgctcacaccca
ctgcctgagacagctgtgcgaggctatcggcgcttcctcaagctgagtcccgagagtgca
gaggagtacattgagtacctcaagtcaagtgaccggctggatgaggccgcccagcgcctg
gccactgtggtgaacgatgagcgtttcgtgtccaaggccggcaagtccaactaccagctg
tggcacgagctgtgcgacctcatctcccagaatccggacaaggtacagtccctcaatgtg
gacgccatcatccgcgggggcctcacccgcttcaccgaccagctgggcaagctctggtgt
tctctcgctgactactacatccgcagcggccacttcgagaaggctcgggacgtgtacgag
gaggccatccggacggtgatgaccgtgcgggacttcacacaggtgtttgacagctacgcc
cagttcgaggagagcatgatcgccgcaaagatggagaccgcctcagagctggggcgcgag
gaggaggatgatgtggacctggagctacgcctggcccgctttgagcagctcatcagccgg
cggcccctgctcctcaacagcgtcttgctgcgccaaaacccacaccacgtgcacgagtgg
cacaagcgtgtcgccctgcaccagggccgcccccgggagatcatcaacacctacacagag
gctgtgcagacggtggaccccttcaaggccacaggcaagccccacactctgtgggtggcg
tttgccaagttttatgaggacaacgggcagctggacgatgcccgcgtcatcctggagaag
gccaccaaggtgaatttcaagcaggtggatgacctggcaagcgtgtggtgtcagtgcggg
gagctggagctccgacacgagaactacgatgaggccttgcggctgctgcgaaaggccacg
gcgctgcctgcccgccgggccgagtactttgatggctcagagcctgtgcagaaccgcgtg
tacaagtcgctgaaggtctggtccatgctcgctgacctggaggagagcctcggcaccttc
cagtccactaaggccgtgtatgaccgcatcctggacctgcgtatcgcgacgccccagatc
gtcatcaactatgccatgttcctggaggagcacaagtacttcgaggagagcttcaaagcg
tacgagcgcggcatctcgctgttcaagtggcccaacgtgtccgacatctggagcacctac
ctgaccaaattcattgcccgctatgggggccgcaagctggagcgggcgcgggacctgttt
gaacaggctctggatggctgccccccaaaatacgccaagaccttgtacctgctgtatgcg
cagctggaggaggagtggggcctggcccggcatgccatggccgtgtacgagcgtgccacc
agggccgtggagcccgcccagcagtacgacatgttcaacatctacatcaagcgggcggcc
gagatctatggggtcacccacacccgcggcatctaccaaaaggccattgaggtgctgtcg
gacgagcatgcgcgtgagatgtgcctgagatttgcagacatggagtgcaagctcggggag
atcgaccgcgcccgggccatctacagcttctgctcccagatctgtgacccccggacgacc
ggcgtgttctggcagacgtggaaggacttcgaggtccggcatggcaacgaggacaccatc
aaggagatgctgcgtatccggcgcagcgtgcaggccacatacaacacgcaggtcaacttc
atggcctcgcagatgctcaaggtctcgggcagtgccacgggcaccgtatctgacctggcc
cctgggcagagcggcatggacgacatgaagctgctggaacagcgggcagagcagctggcg
gctgaagcggagcgcgaccagcccttgcgcgcccagagcaagatcctgttcgtgaggagt
gacgcctcccgggaggagctggcagagctggcacagcaggtcaaccctgaggagatccag
ctgggcgaggacgaggacgaggacgagatggacctggagcccaacgaggttaggctggag
cagcagagcgtgccagccgcagtgttcgggagcctgaaggaagactga
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integrated database retrieval system
