Pongo abelii (Sumatran orangutan): 100461457
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Entry
100461457 CDS
T01416
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
pon
Pongo abelii (Sumatran orangutan)
Pathway
pon03030
DNA replication
pon03410
Base excision repair
pon03420
Nucleotide excision repair
pon03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100461457 (RFC1)
03410 Base excision repair
100461457 (RFC1)
03420 Nucleotide excision repair
100461457 (RFC1)
03430 Mismatch repair
100461457 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pon03032
]
100461457 (RFC1)
03400 DNA repair and recombination proteins [BR:
pon03400
]
100461457 (RFC1)
DNA replication proteins [BR:
pon03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
100461457 (RFC1)
DNA repair and recombination proteins [BR:
pon03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
100461457 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
Rad17
RuvB_N
AAA_14
AAA_5
BRCT_2
AAA_16
AAA_33
AAA_30
AAA_18
nSTAND3
AAA_17
RNA_helicase
AAA_7
NTPase_1
AAA_19
NPHP3_N
AAA_28
Motif
Other DBs
NCBI-GeneID:
100461457
NCBI-ProteinID:
XP_024101889
Ensembl:
ENSPPYG00000014673
LinkDB
All DBs
Position
3:complement(38641315..38718635)
Genome browser
AA seq
1148 aa
AA seq
DB search
MDIRKFFGVIPSGKKLVSETVKKNEKTKSDEETLKAKKGIKEIKVNSSRKEDDFKQKQPS
KKKRIIYDSDSESEETLPVKNAKKQPEKPPVSSKPGKISRQDPVTYISETDEEDDFMCKK
AASKSKENGRSTNSHLGTSNMKKNEENTKTKNKPLSPIKLTPTSVLDYFGTGSVQRSNKK
MVASKRKELSQNTNESALNDEAIAKQLQLDEDAELERQLHEDEEFARTLAMLDEEPKTKK
ARKDTEEAETFSSVQANLSKAEKHKYPHKVKTEQFSDERKSYSPRKQSKYESSKESQQHS
KSSTDKIGEVSSPKASSKLAIMKRKEGSSYKEIEPVVSKRKENAIKLKGEIKTPKKTKSS
PAKKESISPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLES
IERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIR
TMPGKKSKYEIAVETEMKKQSKLERTPQKNVQGKRKISPSKKESESKKSKPTSKRDSLAK
TIKKETDVFWRSLDFKEQVAEETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTIIG
QQGDQSCANKLLRWLRNWQKSSSEDKKHAAKFGKFSGKDDGSSFKAALLSGPPGVGKTTT
ASLVCQELGYSYVELNASDTRSKSSLKAIVAESLNNTSIKGFYSNGAASSVSTKHALIMD
EVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKVRSLVHYCFDLRFQRPRVEQI
KGAMMSIAFKEGLKIPPPAMNEIILAANQDIRQVLHNLSMWCARSKALTYDQAKADSHRA
KKDIKMGPFDVARKVFAAGEETAHMSLTDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGD
MKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPTQAIYASVLPGELMRGYMTQFPTFP
SWLGKHSSTGKHDRIVQDLALHMSLRTYSSKRTVNMDYLSHLRDALVQPLTSQGVDGVQD
VVALMDTYYLMKEDFENIMEISSWGGTPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLQAI
KASRHSTSPSLDSEYNEELNEDDSQSDEKDQDAIETDAMIQKKTKSSKPSKPEKDKEPRK
GKGKSSKK
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atggacattcggaaattctttggagtaataccaagtggaaagaaacttgtaagtgaaaca
gtaaagaagaatgagaaaacaaagtctgatgaagaaactttaaaagcaaagaaaggaata
aaagaaatcaaggtaaatagctcccgtaaagaggatgacttcaaacaaaagcaaccaagc
aagaaaaagaggatcatctatgattcagattcagagtcagaggagacgttgccagtaaaa
aatgccaaaaagcaaccagaaaaaccgccagtatcttctaaacctggtaaaatttcacgg
caggatcctgttacatacatttcagaaacagatgaagaagatgactttatgtgtaagaag
gcggcctctaaatcaaaagagaatggaagatctacaaatagtcatcttggaacatcaaac
atgaaaaagaatgaagaaaacactaagaccaagaataagcctttatcaccaataaaactt
acacccacatcagtacttgattattttggaactggaagtgtccaaagatctaataagaag
atggtggcaagcaaaagaaaagagctttcacaaaatacaaatgagtctgcattaaatgat
gaagccatcgccaagcaattacagcttgatgaagatgcggagctggagaggcagttgcat
gaagatgaagagtttgccagaacattagccatgttggatgaagaacccaagaccaaaaag
gctcgaaaggacacagaagaggcagaaacgttttcatctgtccaagccaatttaagtaaa
gcagaaaaacataaatatcctcataaagtaaaaacagaacaattttcagatgaaagaaag
agctacagtcctaggaagcaaagtaaatatgaaagttcaaaagaatctcagcaacattcc
aagtcatcaactgacaaaataggagaagtctcttctcccaaggccagttctaagctggca
attatgaaaagaaaagaagggagctcttataaagaaatagagcctgtggtctcaaaaaga
aaagaaaatgctattaaattgaaaggagagataaaaactcctaagaaaacgaaaagttct
ccagctaaaaaagagtctataagtcctgaagattctgaaaagaaacgcactaattatcaa
gcttatcgaagctacttaaatcgagaaggtcccaaggctctgggctccaaagaaatacca
aagggagctgaaaattgcttggaaggccttatatttgtaatcacaggcgtgctggagtct
attgaacgagatgaagccaagtctctaattgaacgttatgggggaaaagtaacaggaaat
gtcagcaagaaaacaaattatcttgtcatgggtcgtgatagtggacagtccaagagtgat
aaggccgcagccttggggacaaaaattattgatgaagatggcctgttgaatctgattcga
actatgccaggcaagaaatccaagtacgaaatagcagttgaaactgagatgaagaaacag
tccaaactggagagaacaccccaaaaaaatgtccaaggaaaaagaaaaattagtccatct
aaaaaggaatcagaatctaaaaagagcaagccgacttccaaaagggacagtttggcaaag
acaataaaaaaggaaacagatgtgttttggagaagcctggatttcaaagagcaggtggcc
gaggagacaagtggtgatagcaaggctaggaatttggctgatgacagcagtgaaaacaaa
gtggaaaatttgctctgggtggataaatataagccaacctcactcaagaccataattgga
cagcaaggtgaccagagctgtgccaacaaactcctacgctggctccgaaactggcaaaag
agttcttccgaagataaaaaacacgcagcaaagtttggtaaattttccggcaaagatgat
ggctctagttttaaagcagcgttgctgtcaggccctcctggtgttggcaaaaccaccaca
gcttccctggtgtgtcaggagttgggatacagctacgtggaactgaatgcaagtgacacc
cggagtaagagcagtttgaaggcgattgttgctgagtcactgaacaataccagcatcaaa
ggcttttattcaaatggagcagcctcttcagtaagcacgaaacatgctctcatcatggat
gaagtagatggcatggcaggcaatgaggataggggaggaattcaggaattaattggcctg
ataaaacatactaaaattcccattatttgtatgtgcaatgatagaaatcatcccaaggtt
cgctctctggttcattattgttttgatcttcgttttcaaagacctcgggttgaacagatt
aagggtgctatgatgtctattgcatttaaagaaggtttaaagattccccctccagctatg
aatgaaataattttggcagccaatcaagatatcagacaggttttacataatctgagtatg
tggtgtgcacgaagtaaagcattaacctatgaccaggccaaagctgattctcacagagcc
aaaaaggatatcaaaatgggcccatttgatgttgcccggaaagtgtttgcagctggagag
gagactgctcacatgtcacttacggacaagtcagatcttttttttcatgattattcaata
gcacccctctttgtccaggaaaattacatacatgtgaagcctgtagcagcagggggtgac
atgaaaaagcacttgatgcttttaagcagagcagcggacagcatatgcgatggtgactta
gtggacagccagatccggagtaagcaaaactggagtcttctgcctacgcaggccatttat
gccagtgttcttcctggagagttgatgagggggtacatgacccagtttcccaccttccca
agctggctggggaagcactcgtctacaggcaaacacgatcgtattgttcaggacctggcc
ttgcatatgagtctcagaacttactccagcaaaaggactgtaaacatggattatctgtcg
catctaagggatgcacttgtacagcccttgacctcacaaggagtagacggagtacaggat
gttgttgcacttatggacacatattatttgatgaaagaagactttgagaatatcatggaa
atcagcagctggggtggcacacctagtcccttttcaaagctggatcccaaggtgaaagca
gccttcacaagagcttacaataaggaagcccaccttactccatattcacttcaagctata
aaggcatctagacacagcacaagcccatccctggattcggaatacaacgaagaattaaat
gaagatgactctcagtctgatgagaaagaccaagatgctatagaaactgatgccatgatc
cagaaaaagacaaaatcttcaaagccttcaaaaccagaaaaagataaggagcccagaaaa
ggaaaaggaaaaagttcgaagaaatga
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