Pontibacillus sp. ALD_SL1: IMZ31_00695
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Entry
IMZ31_00695 CDS
T09942
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pona
Pontibacillus sp. ALD_SL1
Pathway
pona03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pona00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IMZ31_00695 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pona03021
]
IMZ31_00695 (rpoC)
03400 DNA repair and recombination proteins [BR:
pona03400
]
IMZ31_00695 (rpoC)
Enzymes [BR:
pona01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IMZ31_00695 (rpoC)
Transcription machinery [BR:
pona03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IMZ31_00695 (rpoC)
DNA repair and recombination proteins [BR:
pona03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IMZ31_00695 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QST00181
LinkDB
All DBs
Position
135529..139146
Genome browser
AA seq
1205 aa
AA seq
DB search
MLDVNNFEYMKIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGIVCDRCGVEVTKAKVRRERMGHLELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFAAYVVTDQGDTALERKQLLSEKEYRTYREKYGKSFQALMGAEAIRKLLQ
DIDLEKEVETLKEELKTAQGQRRTRAIKRLEVLEAFRGSGNDPSWMILDVLPVIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPTIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGLPKE
MALELFKPFVMRELVDRGLAHNIKSAKRKIERIHPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREDAIGEGKVFKDTDEALIAYQNGYVHLHTRVAVH
ARSLNNGTFTEEQNSQLLLTTVGKLIFNEILPESFPYINEPTQSNLEGKTPEMYFIEKGT
DVKEEIKKRELVSPFKKKILGNIIAEVFKRFKISETSKMLDRMKDLGFAYSTKAGITVGV
SDIVVLPEKQTILEEAQGKVDKVMKQFRRGLITDDERYDRVIAIWSAAKDDIQDRLMHTL
DPANPIFMMSDSGARGNASNFTQLAGMRGLMANPAGKIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLEVASLTEGTEMIEPLI
DRLIGRTAFKTVLNPETGEVMATRDQIITEDMARSIVDAGVEKVTIRSAFTCNTRHGVCK
KCYGRNLATGSEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQAVISEIHGTVEEVNEVKEKLEITVQGEVEKRSYTAPYGARMKVTVGDSVKAG
EELTEGSVDPKELLKIQGVEGVEMYLLREVQKVYRMQGVEIGDKHVEVMVRQMLRKVRVL
DAGDTDVLPGSLLEIHQFREANRDALVEGSQPAVGRPVLLGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMPRYRSVQPASDELTEDMIKAEEPE
EIPQS
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtaaacaactttgaatatatgaagataggtttagcttcgcctgataagatt
cgttcttggtcatttggtgaagtgaagaaaccagaaaccattaactatcgtacgttaaag
ccggagaaagacggtttgttctgtgaacgtattttcggtcctacaaaagactgggaatgt
cattgtggtaagtacaagcgtgttcgttacaaaggaatcgtttgtgatcgctgtggcgta
gaagtaaccaaagcgaaagtacgtcgtgagcgtatggggcacttagaattagctgcccct
gtctctcacatttggtactttaaaggaattcctagtcgtatgggacttgttcttgatatg
tcacctcgtgctttagaagaagtaatctacttcgcggcatatgtggtaacagatcaaggt
gatacggctcttgagagaaagcagctactttctgagaaagaataccgtacgtatcgtgag
aaatacggtaagtccttccaggctctaatgggtgcggaagcgattcgtaaattgcttcaa
gatatcgatctagagaaggaagtagaaactcttaaagaagaattgaaaactgctcagggt
cagcgtcgtactcgcgccattaagcgtttagaagtgcttgaggctttccgtggatcaggt
aacgacccatcttggatgatcttagacgttcttcctgtaattccaccggaaattcgcccg
atggtacaacttgacggtggacgttttgcgacatctgatttaaacgacctatatcgtcgt
gtaattaaccgtaataaccgtttgaagcgtcttttagatcttggagctcctacgattatc
gttcaaaacgaaaaacgtatgctacaagaagctgtagacgccttgattgataacggccga
cgtggccgtccggttactggaccaggaaaccgtcctcttaagtccctttcccatatgctg
aaaggtaaacaaggtcgtttccgtcagaacttgcttggtaaacgtgtagactactctggt
cgttctgtaatcgtcgttggacctagtctgaagatgtatcagtgtggtttaccgaaagaa
atggctctagaactatttaaaccattcgtaatgcgcgaattagtcgatcgtggacttgct
cacaacatcaagtctgctaaacgtaaaatagaacgcattcacccagaagtttgggatgtt
ctagaagaagtgattaaagagcacccggttcttctaaaccgtgcccctacacttcaccgt
cttggtattcaagcgttcgaaccaacacttgtagaaggacgtgcaattcgcctccaccca
ttagtatgtacagcatataacgctgactttgatggtgaccaaatggctgttcacgtacca
ctatctgcggaagcacaagcggaagctcgtatcttaatgcttgctgcgcaaaacatcctg
aatcctaaggatggaaagccggtagttacaccttcccaggacatggttttaggtaactat
tatttaacactagagcgcgaagacgctattggtgaaggtaaagtatttaaggatactgac
gaagctttaattgcttatcagaatggatatgtccacctacacacacgtgtagctgttcat
gctcgttcattaaataatggaacattcactgaagaacaaaacagccagctgttattaaca
actgttggtaagttaatcttcaacgaaattctacctgaatctttcccttacattaatgaa
ccgactcaaagtaaccttgaaggcaaaacgcctgagatgtacttcattgagaagggtaca
gatgttaaagaggaaatcaaaaaacgtgaattagtttctcctttcaagaagaagattctt
gggaacattatcgcagaagtctttaaacgctttaagattagtgaaacgtctaaaatgctt
gaccgcatgaaggacctaggtttcgcttattcaactaaagctggtatcactgttggtgta
tctgacatcgtggtacttccagagaaacaaaccatccttgaagaagctcaaggtaaagta
gacaaagttatgaagcagttccgtcgtggtttgattacagatgatgagcgttatgatcgc
gttattgctatttggtcagcggccaaagacgatattcaagatcgattaatgcatacactt
gatcctgccaacccaatcttcatgatgagtgattccggagctcgtggtaacgcatctaac
ttcacacagttagctggtatgcgtggtcttatggccaacccggctggtaagatcatcgaa
cttccgatcaaatcaagtttccgtgaaggtctgacggttctagagtacttcatctctaca
cacggtgctcgtaaaggtcttgccgatacagcactaaaaacagccgactcgggttacctt
actcgtcgtctagttgacgtagcacaagatgttatcgtccgtgaagatgactgtggcact
gaccgaggcttagaagtggcttcccttactgaaggtacagaaatgattgaaccgctgatt
gaccgtctaattggacgtacggcattcaagacagttctcaatccagaaacaggcgaagta
atggccactcgtgatcagatcattacagaagacatggcacgttctattgtggatgctggc
gttgaaaaagtaacgatccgttctgcatttacatgtaatactcgtcatggtgtttgtaag
aaatgttacggccgtaacttagcaactggatctgaagttgaagtaggagaagcagttgga
atcatcgccgcgcaatcaatcggtgagccaggtacacagcttacaatgcgtaccttccac
acaggtggtgtagccggagatgatatcacgcaaggtcttcctcgtatccaagagctattt
gaagctcgtaaccctaaaggtcaagctgtaatcagtgagatacatggtacggttgaggaa
gttaatgaagttaaagaaaagctcgaaatcactgtgcaaggcgaagtagaaaaacgtagt
tacacagctccatatggtgctcgtatgaaagtaactgttggtgattctgtcaaagctggt
gaagagctaactgaaggttctgttgatccgaaagaattactgaagatccaaggtgtagaa
ggcgttgaaatgtatcttctacgtgaagttcaaaaagtttaccgtatgcaaggtgtagaa
atcggtgataaacacgttgaagtaatggttcgccagatgcttcgtaaggtgcgtgttctt
gatgccggtgatacggatgtacttcctggctcactacttgagatccaccaattccgagaa
gcaaaccgtgacgcacttgtagaaggcagccaaccagcagttggtcgtccggttctacta
ggaatcacgaaagcgtctctagaaacggattcattcttgtccgccgcatccttccaggag
acaactcgtgtcctaactgatgctgctatcaaaggaaaacgtgacgaattgctaggactt
aaagaaaatgttattattggtaagttggttccggccggtacaggtatgcctcgctaccgt
tcagttcaaccagcatccgatgaattaacagaagatatgattaaagctgaagagcctgaa
gagatcccacagtcttaa
DBGET
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