Pontibacillus sp. ALD_SL1: IMZ31_02005
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Entry
IMZ31_02005 CDS
T09942
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pona
Pontibacillus sp. ALD_SL1
Brite
KEGG Orthology (KO) [BR:
pona00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pona03009
]
IMZ31_02005 (rlmD)
Enzymes [BR:
pona01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
IMZ31_02005 (rlmD)
Ribosome biogenesis [BR:
pona03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
IMZ31_02005 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_15
Cons_hypoth95
Methyltransf_25
MTS
PrmA
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_11
UPF0020
HHH_RecD2
Motif
Other DBs
NCBI-ProteinID:
QST00393
LinkDB
All DBs
Position
382218..383591
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AA seq
457 aa
AA seq
DB search
MSKPAPPVQKNDTIEVTFEDLTHEGNGVGKVDGYPLFVPYALPGETGKVKVIKVKKNFGF
GKLLDVTEASQDRVDPPCPVYVQCGGCQLQHMSYQMQLDMKQNQVKNAMHKIAHLSDVPV
HPTIGMEDPWYYRNKVQIPVGQDGDRLKAGFYRKRSHDIIEMDTCMIQDEHNNRMVEAVR
RIAEKYGIEAYNEEKHRGVLRHIMVRTGQTTGDVMVVMVTRTKQLPYAEQIVEEIRETYP
NVKSIVHNVNSKKTNVILGDKTTVLYGDDYIVDRIGDIEFKISPKSFYQVNPVQTKKLYD
QALAYADLKGHETVIDAYSGIGTISLFLAQQAKKVYGVEIVAPAVTDAKKNAKLNGMDNA
EFFVGEAEKVFPWWKSQGLDPDVIVVDPPRKGCDEELLKAMIEMQPEKIVYVSCSPSTLA
RDLRILEDGGFETQEVQPVDMFPQTGHIENVAWLKRK
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagccagcaccaccggtacagaagaatgacacaattgaagtgacatttgaagac
ttaacgcacgaagggaacggcgtcggcaaagtcgatgggtacccgctcttcgtaccttat
gctctaccaggtgaaacaggaaaagtgaaagtcattaaagtgaagaagaacttcggattt
gggaagttactagatgttacagaagcaagccaggaccgtgtagacccgccatgtcctgtt
tacgtgcaatgcggtggctgtcagcttcaacatatgagctaccaaatgcagctagatatg
aaacagaatcaagtgaaaaacgctatgcataagatcgcacacttaagcgacgtgcctgta
catccaaccatcggcatggaagacccgtggtactaccgtaataaagttcagatcccagtc
gggcaagacggtgatcgcctgaaggctggattctaccgcaagcgcagccacgacataatt
gagatggacacatgcatgattcaagacgaacacaacaaccgcatggtcgaagctgttcgc
cgcattgctgagaagtacggcattgaagcttacaacgaagaaaaacaccgcggcgtcctt
cgtcacattatggttcgcaccggccaaacaactggcgatgttatggttgtcatggtaacc
cgtacaaagcagttgccatacgcagaacaaattgtcgaagagattcgagagacgtatccg
aatgtgaagtcaatcgttcacaacgttaactcaaagaaaacaaacgtcatcttaggtgac
aaaactaccgttctatacggagacgactacatcgtcgaccgcattggcgatatcgagttc
aagatctcaccaaaatcgttctaccaggtcaatcctgttcagacgaagaagctatacgat
caagctctagcttatgcagacctaaaaggtcacgaaacggtaatcgacgcttacagcggc
atcggcacaatctccctcttcttagcccaacaagcgaaaaaggtatatggcgttgaaatc
gttgccccagccgtaacggacgctaagaaaaacgcaaaactaaacggcatggacaacgct
gagttcttcgtcggagaagccgagaaagtcttcccatggtggaagagccagggccttgat
cctgatgtgatcgtagttgaccctccacgtaaagggtgcgacgaagagctactaaaggcg
atgatcgagatgcagccagagaaaattgtgtatgtatcctgcagcccatcaacactagcc
cgcgaccttcgcattctagaagatggtggatttgagacccaggaagtacagccagtggac
atgttcccacaaaccggccacattgagaatgtagcttggttaaaaagaaaataa
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