Pontibacillus sp. ALD_SL1: IMZ31_12920
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Entry
IMZ31_12920 CDS
T09942
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
pona
Pontibacillus sp. ALD_SL1
Brite
KEGG Orthology (KO) [BR:
pona00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pona03019
]
IMZ31_12920
03009 Ribosome biogenesis [BR:
pona03009
]
IMZ31_12920
Enzymes [BR:
pona01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IMZ31_12920
Messenger RNA biogenesis [BR:
pona03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IMZ31_12920
Ribosome biogenesis [BR:
pona03009
]
Prokaryotic type
rRNA helicases
IMZ31_12920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QSS98981
LinkDB
All DBs
Position
complement(2531454..2532782)
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AA seq
442 aa
AA seq
DB search
MTVQTFKSMALTKEMIDMVDQLGFHEPTPIQKKVIPSVLRGESLIGQSHTGSGKTHSYLI
PLLNGIDVSRKEVQTVITAPTRELATQIYDEVRKMVQLSEHGDALKAKLLIGGTDKQKTI
DKLKDQPQIIVGTPGRILDMVQEEALDVYTASSFVIDETDLMFDLGFIEDVDQVLVRMQA
DLQLLVFSATIPVKLKPFLKKYLENPTYIQADEDKPSPEKMEHRLIPLRHRDKADMIMSI
TKLIHPYLAIIFANKKERANELARELMDKGLEVGVIHGGLTPRERKRVVKDIKNLRYQYI
VATDLAARGIDIQGVSHVINADLPKEEEFYIHRVGRTARAGLEGTAINLYTETDEPLIKK
LENSGLTFDSYDVKKGEFVPVKDRNQRSTRKIDENDTDKEAWTRVKRPKKVKPGYKKKMK
YQQEQIKKKLNKQQARQRNKRK
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgacagttcaaacatttaaatcaatggctcttactaaagagatgattgatatggtggat
cagttaggtttccatgagcctacaccgattcaaaagaaagtaatcccttctgttttaaga
ggagaaagtttaattggacaatcacatacagggtcaggaaaaactcattcttaccttatc
cctttactaaatggaatagatgtttcgcgtaaagaagttcaaaccgtgattaccgctcct
acaagggagttggcgactcaaatttatgacgaagttcgtaaaatggtgcagctatctgaa
catggcgatgctctcaaggcgaagcttctaattggtggcactgataaacagaaaacaata
gacaaattaaaagatcagcctcaaattatagtcggtacgccagggcgtatccttgacatg
gtacaagaagaagctcttgatgtgtatacagcctcttcttttgttattgatgaaactgac
ctaatgtttgatttaggttttattgaagatgtcgatcaagtgcttgttcgtatgcaagct
gatttacagctactcgtcttttctgcgacgatccctgtaaaactaaagccattcttgaag
aagtacttggagaatccaacctatattcaagctgatgaagacaagccctctcctgagaaa
atggagcatcgcctcataccacttcgtcatagagacaaagcagatatgattatgagtatt
acaaagctcatccatccttatttggctattatatttgccaataagaaagaaagagccaat
gaattagcgcgagagctgatggataaagggttagaagttggggtcattcacggcggttta
acaccgcgtgagagaaaacgtgtggtcaaagatattaaaaacctgcgctatcaatatata
gttgctacggaccttgctgctcgtggtatcgatatacaaggtgttagtcacgtgatcaat
gctgatctaccgaaagaagaagaattttatattcaccgtgtaggtcgtactgcccgcgct
ggactagaagggacagcgatcaacctttacacagaaacggatgaacctcttattaagaaa
cttgagaactcaggcttaacgtttgatagttatgatgttaagaaaggtgaattcgtacct
gttaaagatcgaaaccagcgttcaacgcgtaaaattgatgagaatgatacagataaagaa
gcgtggacacgcgtaaagcgaccgaaaaaagtgaagcctggttataagaaaaaaatgaaa
tatcaacaagaacagattaaaaagaaattaaataaacaacaagctaggcagcgaaataag
agaaaataa
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