Candidatus Ponderosibacter sp. Uisw_141_02: ABXT40_05820
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Entry
ABXT40_05820 CDS
T11339
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pond Candidatus Ponderosibacter sp. Uisw_141_02
Pathway
pond03410
Base excision repair
pond03430
Mismatch repair
pond03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pond00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ABXT40_05820 (recJ)
03430 Mismatch repair
ABXT40_05820 (recJ)
03440 Homologous recombination
ABXT40_05820 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pond03400
]
ABXT40_05820 (recJ)
DNA repair and recombination proteins [BR:
pond03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
ABXT40_05820 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
ABXT40_05820 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABXT40_05820 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
XOJ57458
LinkDB
All DBs
Position
complement(1139718..1141529)
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AA seq
603 aa
AA seq
DB search
MAEDAFLGITHSTSGARWIEASTQLSGPNQDRLAAALMDVFDDLPIPLARIMAGMGLTTE
TAPHYIEPKIRDLLPNPSRFVDLDKAAKRLADAVMSKTSIGVFGDYDVDGAAAAALLIST
MRDLDVACDVHIPDRFTEGYGPNKSALFALKEKGAQLLVTVDCGITAHAPLAAVAEIGLD
VIVIDHHIAGPELPRAQSVVNPNRLDEDGQYGYLCAAGVVFIVLVGMVRELRGRGHFAEG
RTPPDLMACLDIVALATVCDVVPLVGLNRAFVRQGLKVMAERRHPGLTKLADVAGMNAAP
NVYAFGFLLGPRINAAGRIGGSGLGVKLLACNNSDEAAGLALRLDEMNRERKQIEEGIRI
AAIDRAAEINHPVLIIHDPSWHEGVIGIVAGRVRERFGKPALVIAMNDGGIGKGSGRSIA
GFRLGNAIIAAHQAGILEGGGGHDMAAGFTVRADKIDELQHFLNDRLRADLNGVIPQTLH
KVSGLLSVAGCKPDLADWLDRLGPFGSGNPEPRFVIPDCRIKSAKFVGEAGAHLSCRLDD
GSGTLNAIAFQAGGTPLGQAVADARDGHYLHILGRVRRDRFRGGNAMQFEIDDVAVPPLA
FAR
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggctgaggacgctttccttggcataacccattcgacaagcggcgcccgttggatcgag
gcgtcaacgcaattatcagggccaaatcaggatcgacttgccgccgccttgatggatgtg
tttgacgatctacccattcccttggcacgcatcatggctggtatgggcttaacaaccgaa
actgcaccgcattatattgagccgaaaatccgtgatttattgcccaacccgtcaagattc
gtagatcttgacaaggcggccaagcgactagccgatgcggttatgagcaaaacctcgatc
ggcgtttttggtgattatgatgttgatggtgcggcggcggcggcgctgctaatttcgacg
atgcgcgatcttgatgtggcttgtgatgtccatattcctgaccgctttaccgagggctat
ggcccgaataagtccgctttgtttgccttaaaggaaaaaggcgcacagctgttggtgacg
gtcgattgcggtatcacagcgcatgcgccattggcggcagtggccgaaatagggcttgat
gtcattgtgatcgaccatcatatcgccggccccgaattgccgcgagcgcaatcggtggtg
aaccccaaccggctggatgaagatggacaatatggctatctttgcgccgcgggtgttgtt
tttatcgtgcttgttggcatggttcgtgaattgcgtggacgcggccattttgccgaaggc
cgcaccccgcctgatttgatggcatgtcttgatattgttgcgttggccacggtttgtgat
gtggtgccgctggttgggttaaaccgcgcttttgtccgccaagggttaaaggtgatggcc
gagcgtcgtcatcctgggttgaccaagcttgccgatgttgccggcatgaacgcagcacct
aatgtttatgcttttggctttttgcttggcccacgaatcaatgccgctggccggattggc
ggatctggccttggggtgaagctgcttgcatgcaataatagtgatgaggcggctggtctg
gcgcttcggcttgatgaaatgaaccgcgagcgcaagcagattgaagaaggcatccgcatt
gccgccattgatcgggctgccgaaataaaccatccagttttgatcattcatgacccatct
tggcatgaaggcgtgatcggcattgttgctggcagggttcgcgaacgttttggcaagcct
gctttggtgattgccatgaatgatggtggcattggcaaaggatcggggcgcagcatcgct
ggttttcggcttggcaacgccattatcgccgcgcatcaggctggaattctggaaggtggc
ggcgggcatgatatggccgcaggctttaccgtcagggctgataaaattgacgagctacag
cattttctgaatgaccggctgagggctgatttaaatggggttattccgcaaacactgcat
aaagtaagtggtctgttgagcgttgctggatgcaaacctgatcttgccgactggcttgac
cggcttggcccgtttggcagcggcaatcccgagccgcgatttgtcattcccgattgtcga
atcaaatcagcaaaatttgtgggcgaggcgggtgcgcatttatcctgccggttggatgat
ggcagcggtaccttaaatgcaattgcgtttcaggcgggcggtacgccgcttgggcaggca
gtagccgatgcacgcgacggccactatttgcatattcttggtcgggtgcggcgcgaccgg
tttcgtggcggcaatgccatgcagtttgaaattgatgatgtcgccgttccgccactggca
tttgcgcgctag
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