Candidatus Ponderosibacter sp. Uisw_141_02: ABXT40_06595
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Entry
ABXT40_06595 CDS
T11339
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pond Candidatus Ponderosibacter sp. Uisw_141_02
Pathway
pond03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pond00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABXT40_06595 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pond03019
]
ABXT40_06595 (rnr)
03016 Transfer RNA biogenesis [BR:
pond03016
]
ABXT40_06595 (rnr)
Enzymes [BR:
pond01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ABXT40_06595 (rnr)
Messenger RNA biogenesis [BR:
pond03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABXT40_06595 (rnr)
Transfer RNA biogenesis [BR:
pond03016
]
Prokaryotic type
tRNA degradation factors
ABXT40_06595 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
Motif
Other DBs
NCBI-ProteinID:
XOJ55412
LinkDB
All DBs
Position
1298498..1300816
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AA seq
772 aa
AA seq
DB search
MARKPGDSRPDNAPEKLAMPDEASVLDYINSCAVPPSLRDVTRAFKIGQDHRASMRRMLR
DMAERGILAGDRRGIAAPDTLPEIAVLELTEFDDNGDGMARQVGNDGENQPEIRVILSRR
AGRAPAVGQQVLARLARVGPALYEARIIRVLDRQQKRLFGVVVPAGKGFRLQPADRGKRD
SLVLSAHDKITLKAGDLVEAELLPSRGYIGKNARVITNLGNAGSPGAFSALALAEFSIRH
QFPDAATSESQGLKIPPIKGRRDLRDHPLVTIDGADAQDFDDAVFAEPAENGGWRLLIAI
ADVSHYVRPDSALDQEARKRGNSVYLPDRVVPMLPEAISNDLCSLRPHEDRAVMVAEIQI
DKNGKRLSHHIERALIRSHARLTYDQVQAVFDGVMDEADCDVPHGCLHALFGAWRALNQD
RQDREPLALNLKERRVVMDETGKAIAISQRSQTESQRLIEDFMIAANVAAADSLIASRQP
CVFRVHDTPDPKKAANLSKLAESVGGNFTTGQVLRPHHFNKVLALAENTPDALTVNEAVL
RSQAKAVYSIDNIGHFGLSLRNYAHFTSPIRRYADLLVHRSLVDAAAGRKTGPKDGLKGM
SLDQIAEICTHISETEANAAAAERRTIDRFAAALFEARLGAVVDGIIVAITGFGAFVRLE
DGAADGLLPLNGFPDDFYDYDEAAQSLDGRHNGWRFVMGLSLRVKVTEVTPVSGGILLEW
VEGGLQSEISGRKSAKYAKKHGANTSGRGNRTKSGNGRNASGHGKGSKRKRR
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgtaaaccgggtgactcccgcccagataatgcgccggaaaaactggctatgccc
gatgaggcatcggttcttgactatattaacagctgcgctgtcccgccaagccttcgcgat
gtcacgcgcgcctttaaaattgggcaggatcatcgcgcctcgatgcgccggatgctgcgc
gatatggccgaacgcggcattcttgccggcgatcgccgcggcattgccgcccccgacaca
ttgcctgaaatagccgttcttgaactcaccgaatttgacgataatggcgatggcatggcg
cgtcaggttggaaatgacggcgaaaaccagcctgaaattcgcgtcattctaagccgccgc
gcaggacgtgcgcccgctgttggccagcaggtacttgcccgccttgcccgtgttggtccc
gccttatatgaggcgcgcatcatccgcgttcttgatcgccagcaaaagcgtctttttggc
gttgttgttcccgccggcaaagggtttcgcctgcaaccggccgatcgtggcaaacgtgac
agccttgttttatcggcacatgataaaatcaccctcaaggctggcgatctggtcgaggct
gaattactgccctcacgcggttatattggcaaaaatgcacgggttatcaccaatcttggc
aatgccggatcacctggtgctttcagcgcgctagcccttgccgaatttagcatcagacat
caatttcccgatgcagcaaccagcgagtcacagggcttaaagattccgccgataaaaggc
cggcgtgaccttcgcgatcatccgcttgtgacgattgacggggctgatgcgcaggatttt
gacgatgcggtttttgccgaaccagccgaaaatggcggttggcgtcttcttattgccatt
gctgatgtgtcgcattacgtccgccctgacagcgcgcttgatcaggaagcgcgcaaacgc
ggcaattcggtttatcttcccgatcgtgttgtgccaatgcttcccgaggcgatctcgaat
gatctttgctcgctgcggccgcatgaagaccgcgcggtgatggttgccgaaatccagatt
gataaaaatggcaaacgcctatcgcatcatattgaacgcgccttgatccggtcacatgcc
cgattaacctatgatcaggttcaggcggtttttgatggggtaatggatgaggctgattgc
gatgtgccgcatggctgccttcacgcattgttcggtgcatggcgggcgcttaatcaagac
cggcaagaccgcgaacccttggcgctgaacctgaaggaacgccgcgttgttatggatgaa
accggcaaagccattgccatctcccaaaggtcgcaaaccgaatcgcaacgtttaatcgaa
gatttcatgattgcggccaatgtcgccgcggccgatagtttgattgccagccgccaaccg
tgtgtctttcgcgttcatgacacgcctgaccctaaaaaagcggccaacctttccaagctt
gccgaatctgttggcggcaatttcaccaccggacaggtgcttcgcccccatcatttcaac
aaggttctggcgcttgccgaaaacactcctgatgcattaacggtgaatgaagcggtattg
cgaagtcaggcaaaagctgtctatagcatcgataatatcgggcatttcggattatcactt
cgcaattatgcacatttcacctcgccaatcaggcgttatgctgatctgcttgtccatcgt
tcgcttgtcgatgccgccgcgggccgaaaaaccggtccaaaggacggcttgaaaggcatg
tcgcttgaccagattgccgaaatttgcacgcatatttccgaaaccgaggccaatgcagcc
gcagccgaacgccgtaccattgaccgatttgctgctgccctttttgaagcgcggcttggc
gcggtggttgatggcataattgtcgccattaccggttttggggcttttgtccggcttgaa
gatggtgccgctgacggattattgccgctgaacggctttcctgacgatttttatgactat
gatgaagcggcgcaatcgctcgatgggcggcataatggttggcgctttgtcatggggctg
tctttgcgggtcaaagtgaccgaggtcacaccagtatcaggcggcattcttttggaatgg
gttgaaggcggcctgcaaagcgagatatctggccggaaatcagcaaaatacgcaaaaaaa
catggtgccaacacatcggggcgtggtaacagaacaaagtcgggcaatggccgcaatgcg
tcagggcatggcaaagggtcgaaacgaaaaagacgatga
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