Candidatus Ponderosibacter sp. Uisw_141_02: ABXT40_11390
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Entry
ABXT40_11390 CDS
T11339
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
pond Candidatus Ponderosibacter sp. Uisw_141_02
Pathway
pond03030
DNA replication
pond03430
Mismatch repair
pond03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pond00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABXT40_11390 (holA)
03430 Mismatch repair
ABXT40_11390 (holA)
03440 Homologous recombination
ABXT40_11390 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pond03032
]
ABXT40_11390 (holA)
03400 DNA repair and recombination proteins [BR:
pond03400
]
ABXT40_11390 (holA)
Enzymes [BR:
pond01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ABXT40_11390 (holA)
DNA replication proteins [BR:
pond03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ABXT40_11390 (holA)
DNA repair and recombination proteins [BR:
pond03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ABXT40_11390 (holA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hendrixvirinae_terminase_S
Motif
Other DBs
NCBI-ProteinID:
XOJ56298
LinkDB
All DBs
Position
2316854..2317873
Genome browser
AA seq
339 aa
AA seq
DB search
MKIAPRQIASFLAKPPAEIIAVLFHGNDLGMISERAKQFAQLFSDNLDDVFSVTRLTGDM
LSGEAGLIADSAAAIPAFGDRRLVLVKGRGTELFEACKLALAKPLANTIIIVEASDTTTK
HAIVKLFETSKTAASIGCYADNIGDIRALATSIFAADQVSASRDALDIIAERLGSDRASS
RSEIAKLALMAGPGGKLDADDVRIALGDSALLAIDDIADALASGAVDRLQQALQKAWYED
ANAVMIIRGCQTYFRQLGLASHAMAAGQSAQNALRSLRPPPHFKLQDRLQAHLRRWRPDL
AMDVVNRLQDIELQLKSGGINDQLCTAQSLLGICLRAPR
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcgcgccgcgccaaatcgccagctttctagccaaaccgccagccgaaattatc
gcagttctgtttcatggcaatgatttaggtatgattagcgaacgcgccaaacaatttgcc
cagcttttcagcgacaatcttgatgatgtgttttcggtgacccgcctgaccggtgatatg
ttatcaggcgaggcgggattaattgctgattcagccgctgcgatcccggcttttggggat
cgccgtcttgttttggtcaaaggccgcggcacagaattgtttgaagcttgtaaattggcg
ctggccaagccgcttgccaatacaatcatcattgtcgaagcaagcgatacaacgaccaaa
catgcgattgtcaaattgtttgaaaccagcaagaccgccgcatcaattggttgctatgct
gacaatattggcgatatccgcgcattggcgacaagcatatttgccgctgatcaggtaagt
gcaagccgtgatgcgcttgatatcattgctgaaagactcggcagtgaccgcgcctcatcg
cgaagcgagattgcaaaacttgcattaatggcagggccgggtggcaagcttgacgctgat
gatgtacgcatcgcgcttggcgacagtgcgcttttggcgattgatgatattgccgacgcc
cttgccagcggtgcggttgaccgcttgcaacaggcattgcaaaaagcatggtatgaagat
gccaatgcggtgatgattatccgggggtgccaaacctattttcggcaattgggccttgcc
agtcacgccatggcggcaggccaatcagcgcaaaatgcacttcgtagcctgcgcccacca
ccgcatttcaagcttcaagaccggttgcaagcgcatcttcggcgctggcgacccgatttg
gcaatggatgtggtgaatcggctacaagatattgaattgcaattaaagtctggcgggatt
aatgatcagctttgtaccgcgcaaagccttcttgggatctgtcttcgcgccccgcgctag
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