Pontibacter sp. SGAir0037: C1N53_02890
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Entry
C1N53_02890 CDS
T09933
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pont
Pontibacter sp. SGAir0037
Brite
KEGG Orthology (KO) [BR:
pont00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pont03016
]
C1N53_02890
Enzymes [BR:
pont01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
C1N53_02890
Transfer RNA biogenesis [BR:
pont03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
C1N53_02890
Prokaryotic type
tRNA splicing ligases
C1N53_02890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QCR21397
LinkDB
All DBs
Position
complement(708458..709885)
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AA seq
475 aa
AA seq
DB search
MATAKTKKLSAQDLQNIGFPPGKPLGTALNIVHTYFTELGKNHQIELLQDVLAAPGQYQL
HATLGPLAQAILAQKEAEPIALKEGQHPYAIYGAEAIEQGALRQMEIAMRLPVAKAGALM
PDAHQGYGLPIGGVLATDNAVIPYGVGVDIGCRMSMSIFDIHKGYLDKNREKLKKMLLDN
TRFGHASFKRPIGHEVMDRSEFAEIPVVRELKDRAYSQLGTSGGGNHFVEFGTVEIQDAG
NEFDLPVGTYLAILSHSGSRGLGANIAGYYTKVAMDACRLPQEAKHLAWLDLNTEAGQEY
WLAMNLAGDYASACHHQIHDRLTDALGESAIARIENHHNFAWKEKDAKGREVIVHRKGAT
PAGKGVLGIIPGSMATPGFIVRGKGEVAAINSASHGAGRVMSRTQAKNTLSKPQVQKYLH
KAGIEVIGSDLDEAPMVYKDIHRVMAAQQDLVEVIGTFHPKIVRMNGDEKYMEVD
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagcaaaaacgaaaaaactttccgcacaggatttacagaacataggtttcccg
ccaggaaaaccacttggcacagccctgaacattgttcatacatattttaccgagctgggc
aagaatcaccagattgagctgctgcaggatgtattagctgctccgggccaataccagttg
catgctacgctgggccctctggcgcaggcaatactggcacaaaaagaagcagaacccatc
gccctgaaggaggggcagcacccttatgctatctatggtgcagaagcaattgagcaaggc
gctctccggcaaatggagattgcgatgcgattaccagtagccaaagcaggagctttaatg
cctgatgcgcaccagggatacggcttgcctataggcggtgtgctggccactgacaatgcg
gttattccttatggcgtgggtgttgatataggctgccgcatgagcatgagcatcttcgat
atccataaagggtatcttgataagaaccgggagaagcttaaaaagatgctgctggataat
acccgcttcggccatgcctcttttaaacgccccattgggcatgaggtgatggacagaagc
gagtttgctgaaattccggttgtacgcgagctgaaagaccgggcttattcgcagctaggc
acttccggcggcggaaaccactttgtcgagtttggcacggtggaaatacaggacgctggc
aatgagtttgatctgcctgtaggtacatatctggctatcctctcccactccggttcccgt
ggccttggcgccaacattgcgggctactataccaaagtagccatggatgcctgccgcctg
ccgcaggaagcgaagcatctggcctggctggatctgaatacagaggccggacaggagtac
tggctggcgatgaacctggcaggggattatgcctctgcctgccatcaccagatacatgac
cgcttaaccgatgctttaggcgaaagcgcgatagcacgcatagaaaaccaccataacttt
gcctggaaggaaaaggatgccaaaggccgggaggtgattgtgcaccgcaaaggagcaact
ccggcaggtaaaggtgtgttaggcattatacctggttctatggccacgcccggctttatt
gtcagaggaaaaggcgaggttgctgctatcaactccgcatcgcacggagctggtcgggtg
atgtccagaacccaggccaagaacacactttcgaagccacaggtgcagaaatacctgcat
aaagcaggaatagaagtgatcggctccgacctggatgaagcgccaatggtatacaaagac
attcatagagtgatggccgcccagcaggacctggtggaagtaataggcacctttcatcct
aaaattgtacggatgaacggcgatgagaagtatatggaggtggattaa
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