Pontibacter sp. SGAir0037: C1N53_05100
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Entry
C1N53_05100 CDS
T09933
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pont
Pontibacter sp. SGAir0037
Pathway
pont03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pont00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1N53_05100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pont03019
]
C1N53_05100
03009 Ribosome biogenesis [BR:
pont03009
]
C1N53_05100
Enzymes [BR:
pont01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C1N53_05100
Messenger RNA biogenesis [BR:
pont03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1N53_05100
Ribosome biogenesis [BR:
pont03009
]
Prokaryotic type
rRNA helicases
C1N53_05100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
CCDC24
Motif
Other DBs
NCBI-ProteinID:
QCR21782
UniProt:
A0A4P8RAR0
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All DBs
Position
complement(1214989..1216779)
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AA seq
596 aa
AA seq
DB search
MNKIRFEELPLSAEVQRAIADMGFEEASPIQTEAIPVVLEGRDIIGQAQTGTGKTAAFGI
PTIESIDENDRSVQALILCPTRELAIQVAGEIQKLIKYKPNINIVPIYGGQSYDRQLRAL
KQGVQIVIGTPGRVMDHIERGTLKLDKVKKIILDEADEMLDMGFRDDIEFVLGHMPEERQ
TIFFSATMSKPIMDLTKRYQNDPVIVKVVHKELTVTNIDQVYFEVRNSMKGEVLSRILDM
HNMKSVIIFCNTKRMVDELVTNLQSRGYFADALHGDLNQNQRSNVMGKFRNATLEILVAT
DVAARGLDVDNVEAVFNYDLPQDEEAYVHRIGRTGRAGKSGKAFSFVSGRSDMYKLKDIM
RYTKATIQLQQVPTYEDVNELRTNNFLDKVREVLEKGNLTKHISKIESLVNEEYTSLEIA
AALLKMSIKEVKTKEAGKEAEKGLGTVREGMDRLFITIGKKDRVHPKDLIDLLSENSSIP
AGKVGDIDLYDKFSFVEVPSEFTPEILERVNGIEVDGRSIVVEKSQKKGAKEDKPRGGFG
GDRDRDRGGFGGDRDRGGRGFGGGSRFGGRGDRDRDSSRGGDRRGGSGGGFRRKRF
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaatcagattcgaagagcttccgctttctgcggaggtacagcgtgctatcgct
gacatgggctttgaagaagcctctcctatccaaacagaagctattcctgttgttttagaa
ggccgcgacatcattggtcaggctcagactggtacaggtaaaacagccgcttttggtatc
ccaaccatcgagagcattgatgagaacgaccgtagtgtacaggcgcttattctttgccct
acccgtgaacttgctattcaggtagctggtgaaatccagaaacttatcaagtacaaacca
aacattaatattgtgcctatttacggcggacaatcttacgaccgccagctgcgtgccctt
aaacaaggtgtgcagattgttattggtacaccaggccgtgtgatggaccacatcgaacgt
ggtacgctgaagctcgacaaggttaagaaaattatcctggacgaagcggacgaaatgctg
gacatgggcttccgtgatgatattgaattcgttctgggccatatgccggaagaacgccag
acgatcttcttctctgctaccatgtctaagccgattatggacctgacaaagcgttaccag
aacgatccagttatcgtgaaagtagtgcataaggagcttacggtaacaaacatcgaccag
gtatactttgaagtgcgcaacagcatgaaaggtgaagtgctttcccgcatcctggacatg
cataacatgaaatcggttattatcttctgcaataccaagcgtatggtggatgaactggta
accaacctgcaatcgcgtggttattttgccgatgccctgcacggcgacctgaaccagaac
cagcgttctaacgtgatgggtaaattccgtaacgctacactggaaatactggtggctaca
gacgtagcagcccgtggactggacgtagacaacgtggaagcggtatttaactacgatctg
ccacaggacgaggaggcttacgtgcaccgtattggccgtaccggccgtgccggcaagtct
ggtaaagccttctcctttgtttccggtcgttcagatatgtacaagctgaaggatatcatg
cgctatacaaaagcaactatccagctgcagcaggtacctacttacgaagatgtaaacgag
cttcgtacaaacaacttcctggataaagtgcgtgaggtactggaaaaaggcaatcttacc
aagcatatctcaaaaatcgagtcgcttgtaaacgaagagtatacttctcttgagattgca
gctgccttgcttaaaatgagcatcaaagaagttaagaccaaggaagcaggtaaagaagcc
gaaaaaggactgggtacagttcgcgaagggatggaccgcttgtttatcactatcggtaaa
aaagatcgtgtgcaccctaaagacctgatcgacctgctcagcgaaaacagctctatacca
gccggtaaagtaggcgacatagacttgtacgataaattcagctttgtagaagtaccttct
gaatttactccggagattcttgaaagggtaaatggcatcgaagtggatggccgttctatc
gtagtggagaaatctcagaaaaaaggcgcgaaagaagataagccacgtggcggatttggt
ggagatcgcgaccgtgaccgcggaggtttcggaggcgatcgcgacagaggcggccgaggc
tttggcggaggcagcagattcggtggccgcggcgaccgtgatcgtgattcttccagaggt
ggtgaccgcagaggcggtagcggcggcggtttccgtagaaaaagattttaa
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