Pontibacter sp. SGAir0037: C1N53_14705
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Entry
C1N53_14705 CDS
T09933
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pont
Pontibacter sp. SGAir0037
Pathway
pont03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pont00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C1N53_14705 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pont03021
]
C1N53_14705 (rpoC)
03400 DNA repair and recombination proteins [BR:
pont03400
]
C1N53_14705 (rpoC)
Enzymes [BR:
pont01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C1N53_14705 (rpoC)
Transcription machinery [BR:
pont03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C1N53_14705 (rpoC)
DNA repair and recombination proteins [BR:
pont03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C1N53_14705 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QCR23468
UniProt:
A0A4P8RFF6
LinkDB
All DBs
Position
complement(3530904..3535220)
Genome browser
AA seq
1438 aa
AA seq
DB search
MAFAKNKKLTQDFSKVTISLASPESILERSNGEVTKPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFKSLPNKI
GYLLGLPTKKLDQIIYYERYVVIQPGILAEDGVNNLDFLTEDEYLDMIDKLPRENQLLDN
NDPNKFIAKMGAEALQMLLERTNLDDLSYELRHAAAHETSQQRKAEALKRLRVVEAFRDA
ATRIENRPEWMIIRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRAEGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKNMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDP
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGPAAVLEASMLMLASHNILNPANGAPIAVPSQDMVLGLYYVSKGKRSTENEKIA
GEGMSFYSAEEVIIAINEGRLSKQAYIKVRVKVKDEKGELVTKLIETVAGRVLFNQFVPE
EVGYIDELLTKKKLQQIISRVFKETGMARTAHFLDDIKTLGFQSAYKGGLSMGLGDINIP
AEKDALVEQAKREVDAVWQNYSMGLITDNERYNQVIDIWTRINNQITETLMRRLENDDQG
FNSIFMMMHSGARGSREQIRQLGGMRGLMAKPQKSLQGSVGEIIENPILSNFKEGLDVIE
YFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNEEDCGTLRGLEVSALKDNEDI
VESLSERILGRVTVHDVFDPITNELIVESGSEVTEEIARAIEATAIETVEIRSVLTCESK
RGICAKCYGRNLATGFMVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAVDATIK
AKFGGRIEFEDVRTIETINNEGEPVKVVMGRSGEIKIVDVATGKVFISNHVPYGSFISVN
DGQLVEKGDQICSWDPYNAVILSEFDGEVSYESIIEGITYREESDEQTGYREKVIIDTKD
KTQNPAIVVNPKNGEPKGYNIPVGAHLTVENGEKIKAGQILVKIPRAIGKTRDITGGLPR
VTELFEARNPSNPAVVSEIDGVVTYGSVKRGNREIYIESKDGVKKKYMVPLSKHILVQDN
DFVRAGMPLSDGAITPTDILNIQGPGAVQEYLVNEIQEVYRLQGVKINDKHIEVVVRQMM
QKVVIIDAGDTSFLEHQVVDKVNFMEENDRIIDMKVVEDAGDSVNLKPGQIVTARRLRDE
NSSLKRRDMKLVTVRDASPAVSRPTLQGITQASLGTQSFISAASFQETTKVLSEAAIKGK
ADELLGLKENVIVGHLIPAGTGLREYQKLIVGNQEEYDSLVESKKTSTRSRQQEYQNR
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atggcatttgcaaaaaataaaaaattaactcaggacttctctaaagtaacgataagcctt
gcttcgccagagtcgattctggagcgttctaatggagaggtaacaaagcctgagaccata
aactatagaacctataagcctgagatgggtggtttattctgcgaaagaatattcggacct
gtgaaggactgggaatgccactgcggaaaatataaaagaatcagatataaaggcattatc
tgcgaccgttgcggcgtagaggtgactgagaaaaaagtgcgtcgtgagcgtatgggccat
attgagcttgtagttccggtagcacatatctggtactttaaatcgcttccgaacaaaata
ggttatctgttaggcttaccaacaaagaagctcgaccagatcatctactacgagagatat
gtagttattcaaccaggtattctggcagaagacggtgttaataacctggacttcttaaca
gaagatgagtacctggatatgattgataagctcccacgtgagaaccagttgctggataac
aacgatccaaacaagttcatcgcgaaaatgggtgctgaagcattacaaatgttgctggag
cgtacgaaccttgacgatctgtcttatgaacttcgtcatgctgctgcacatgaaacttct
cagcaacgtaaggcagaagcgttaaagcgtctgcgtgtagtagaagctttccgtgatgct
gcaacaagaattgaaaacagaccggagtggatgattatccgcatggtacctgttattcca
ccagagcttcgcccacttgttcccttggatggtggtcgtttcgcaacttctgatttgaac
gacctttacagacgtgtaattatccgtaacaaccgtctgaagcgtctgatcgaaattaaa
gcgcctgaagtaattcttcgtaacgagaagcgtatgctgcaggaagcggtagactctctg
tttgacaactcacgtaaagtgaacgctgttcgtgcagaaggtaaccgtgcgttgaaatca
ctttctgacatgttaaaaggtaagcagggacgtttccgtcagaacttacttggtaagcgt
gttgattactccggccgttctgtaattgtggttggtcctgaactgaagctgcacgagtgt
ggtctgcctaagaacatggcagctgagctctttaagccgttcatcatccgcaagctgatc
gaaagaggcattgtgaagactgtgaagtcagctaagaaaatagtagaccgtaaggaccct
gttgtttgggatatcctggagaacgtgctgaaaggccacccagtgctccttaaccgtgct
cctacgctccacaggttaggtattcaggcattccagccaaaactgatcgaaggtaaggct
atccagctgcacccactggtgtgtactgcgttcaacgccgactttgacggtgaccagatg
gcggtgcacgttcctctgggacctgctgctgtactggaagcttctatgctgatgcttgct
tcgcacaacatcctgaaccctgccaacggtgctcctattgcggtaccttctcaggacatg
gtacttggtctgtattatgtatcaaagggaaagcgtagcacagaaaatgaaaaaattgct
ggtgaaggcatgagcttttactctgcagaagaagttatcattgctattaatgaaggacgt
ctttctaagcaggcttacattaaagtaagagtaaaggtaaaagacgagaaaggcgagctt
gttacaaagttaatcgaaacagtagctggccgtgtgcttttcaatcagtttgtaccagaa
gaagtaggatatatagatgaactgcttacgaagaaaaaacttcagcagatcatttcgcgc
gtgttcaaagaaacaggaatggcgcgtactgctcacttcttagatgatatcaaaactctt
ggattccagtcggcctataaaggtggtctgtcaatgggtcttggagatatcaatatacca
gctgaaaaagatgctctggttgaacaggctaaaagagaagtagatgctgtatggcagaac
tactcaatgggtctgatcacagataacgagcgttacaaccaggtgattgatatctggact
cgtatcaacaaccaaatcactgaaacgttgatgcgtcgtctggaaaatgatgatcagggc
tttaactcgatcttcatgatgatgcactcaggtgcccgtggttctagagagcagattcgt
cagttaggtggtatgaggggtctgatggcgaaacctcagaaatcgcttcaggggtcagta
ggtgagattatagaaaacccaatcctttcaaactttaaggaaggtctggatgtaatcgag
tacttcatctctacacacggtgctcgtaaaggtcttgctgatacagcgcttaaaactgcg
gatgccggttacctgactcgtcgtctggtagacgtttcgcaggacgttattgtgaacgaa
gaagactgcggtacactacgtggtctggaagtaagcgcactgaaggacaacgaggatatt
gtggagtcactgtctgagcgtatcctgggccgtgtaacagtacatgatgtgttcgatcct
attacaaatgaactgattgtagagtcaggttcagaagtaacagaagaaattgcacgtgct
attgaagcaacagctatcgagacagtagagatccgttcagtattaacctgtgaatctaag
cgtggtatttgtgctaaatgctatggccgtaacttggcaacaggctttatggtgcagaaa
ggtgaggctgttggtgtaattgcagcacaatctatcggtgagccaggtacacagttaaca
cttcgtacattccacgtgggtggtactgcctctaacattgctgttgatgcaacaattaaa
gcaaaattcggaggtagaatagagtttgaagatgttcgtacaattgaaacgatcaataat
gaaggtgaacctgttaaagtagtaatgggtcgttctggtgaaataaagattgttgacgta
gctactgggaaagtatttatcagtaaccacgttccttacggatctttcatcagcgttaat
gatggacaattagtagaaaaaggtgatcaaatctgtagctgggatccatataatgcggtt
atactttctgaattcgatggtgaggtctcttacgaatcgattatcgaaggtatcacatac
cgtgaggagtccgatgagcagacaggttaccgtgaaaaagttattattgataccaaagat
aagacacaaaaccctgctatagttgttaatccgaagaatggcgaaccgaaaggctataat
attccggtaggagcacacttaacagtagagaatggtgagaaaatcaaagccgggcaaatc
ctggtgaagatacctcgtgcaattggtaaaacaagagacattacaggtggtctgccacgg
gtaacggaattgttcgaagccagaaacccttctaacccggcagttgtgtcagaaattgat
ggtgttgtaacatatggcagcgtgaagcgtggtaatcgtgaaatttacattgagtcgaaa
gacggtgtgaagaaaaaatacatggtgccgctttccaagcacatcctggtacaggacaat
gacttcgtacgtgcaggtatgccattatctgacggtgcaattacaccaacagatatctta
aatattcaaggcccgggtgctgtacaagaatacctggtaaatgaaattcaggaggtatac
cgtctgcaaggtgtgaaaatcaatgataagcacatcgaggtagttgttcgtcagatgatg
cagaaagttgttatcattgatgctggtgatacaagcttcctggaacaccaggtagttgat
aaagtgaacttcatggaagaaaacgacaggatcatcgacatgaaagtggtggaagatgct
ggagattctgtgaacctgaagccaggtcagattgtaacggcaagaaggctgagagatgaa
aactccagcttaaaacgtcgtgatatgaaactggtaacagtacgtgatgcgtcaccagct
gtatcaagaccaacgttgcagggtattacccaagcttcattaggtacgcaaagctttatt
tcagcggcatcattccaggaaacaactaaagtactgagcgaggctgccatcaaaggtaag
gcagatgaattgctaggcttgaaagaaaacgtaatagtaggtcatctgattccggcaggt
acaggcttaagagagtatcaaaagctgattgtaggaaatcaggaagaatacgattcgctg
gtagagtcaaagaaaacctctacaagatcaagacagcaggagtatcagaacagataa
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