Pontibacter sp. SGAir0037: C1N53_16215
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Entry
C1N53_16215 CDS
T09933
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pont
Pontibacter sp. SGAir0037
Pathway
pont03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pont00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1N53_16215 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pont03400
]
C1N53_16215 (mfd)
Enzymes [BR:
pont01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1N53_16215 (mfd)
DNA repair and recombination proteins [BR:
pont03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C1N53_16215 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
Helicase_C
DEAD
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
DUF7398
Motif
Other DBs
NCBI-ProteinID:
QCR23737
UniProt:
A0A4P8RFR9
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All DBs
Position
3892203..3895568
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AA seq
1121 aa
AA seq
DB search
MKVKDFLELYRLDSVVQTIAERLKADTKYRLQLKGLSGSLDAVIASAVYTINPKHQLFVL
HDREEAAYFFTDIKNLLGDEKDILLFPTSYKRPYSFDETENANILMRAEVLNRLNQKSSK
GELIVTYPEALTEKVINRKSLVENTLGAKEGEKLDVNFLSEMLAEYGFERTEFVYEAGQY
AVRGGIVDVYSYANDLPYRIELFGDEIESIRTFDPETQLSVEAKKAISIIPNVQTKLLQE
TREAFLDFLPDNTNIWFKDVRQTLDVIEEYFDKASHAFEKMLAGSGGTQIVSDPEQLFQT
QKQFKQLLENYNVVEMGKRFHFRTAEVMQLQSKPQPSFNKDFKRLVKDLHEQQGAGFVNV
IATDSPRQINRLTMIFDELDHDVRFQHLPISLREGFIDQTLKVTCYTDHQLFDRFYQHKA
KEGHSKSKAMTLKELRSLQPGDYVTHTDYGIGRFAGLEKVEVGGRMQEAIRLVYRDDDLL
YVSIHALHKISKYSGKEGGPPSMSKLGSPEWENKKKKVKSKVKDIAHELISLYAKRKAAP
GYAFSRDGFLQAELESSFIYEDTPDQGKATEDVKADMEQPHPMDRLVCGDVGFGKTEVAI
RAAFKAACDGKQVAVLVPTTILAMQHFRTFRDRLEQFPITVDYINRFKTAKDTKETLKRV
AEGKVDILIGTHRIVSKDVKFKDLGLMIIDEEQKFGVKTKDKLKEMKVNVDTLTLTATPI
PRTLHFSLMGARDLSVIATPPPNRQPVKTELHVFDEALIRDAVVHEMKRGGQVFFVHNRI
KDIEEVAGMILRLVPDCKVTYAHGQMDPEKLEKRMMKFVNGDYDVLVSTNIIESGLDIEN
ANTIIINRAHMFGLSDLHQMRGRVGRSNKKAYCYLLTPPVAGLPSDARKRLSTLEEFSDL
GEGFKIAMRDLDIRGAGNLLGGEQSGFITDLGFEMYHQVLDDAIKELKETEFRELFLGDN
LEQFIEPVRECNIETDMEVLIPESYVGNISERLNLYSKLDSTKDLQELEKLQNSIIDRFG
PLPEEVQKLIEIVKLRWQAQQLGFEKLTIKKEVMKGYLPSENNDAYFQSEVFGNILKYVQ
QHSRRSRLKEAKNKLIVIVEDIRNIKDAKEVFEGLGVEAVA
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagttaaagatttcttagaactgtaccgcctcgacagcgtggtgcaaaccattgct
gaacggctgaaggctgatacgaaataccgcctgcaattaaaaggcttgtctggcagtctg
gatgctgtaatagcctcggcagtttataccataaatccgaagcaccaactttttgtacta
cacgacagagaggaggctgcctatttttttaccgatatcaagaacctgctcggcgacgag
aaggatatcctgcttttcccgacttcatacaagcggccttacagcttcgacgaaaccgag
aatgctaatatcctgatgcgggctgaggtgcttaaccggctcaaccagaaatcgagcaaa
ggcgaactaattgtaacttacccggaagcgctaaccgaaaaagtgattaacagaaaatca
ctggtagaaaacacactgggtgccaaggaaggcgagaaactggatgtaaactttctgagc
gagatgctggcagagtatggcttcgagcgtactgagttcgtgtatgaagctggccagtat
gccgtgcgcggtggtattgtggatgtatactcttatgccaatgacctgccgtatcgcatc
gagctttttggcgatgaaatagagagcattcggaccttcgatccggaaacacagctttcg
gtggaggccaagaaagctatttccattattccaaacgtacaaaccaagttgctccaggaa
acgcgtgaagctttcctggacttcctgcccgacaataccaacatctggtttaaagatgtg
cggcagacactcgatgtgattgaggaatattttgacaaagcgtcgcatgcttttgagaag
atgctggctggcagcggtggcactcagattgtgtctgaccctgaacagctgttccagaca
cagaaacagtttaagcagctgctcgaaaactataatgtggtggaaatgggcaaacgtttt
catttccgtaccgccgaggttatgcaactacagtctaagcctcagccctctttcaacaaa
gattttaaacgtctggtgaaggacctgcacgagcagcaaggcgcaggtttcgtgaacgta
atcgctaccgattcgccacgccagatcaaccgcctcaccatgatttttgatgagttggac
cacgatgtgcggtttcagcacctgcccatctccttacgtgaaggcttcatagatcagacg
ctgaaagttacctgctataccgaccaccagttattcgaccgtttttaccagcacaaagcc
aaagaagggcattctaagtcgaaggcgatgacgctgaaagagctgcgctcgctgcagccc
ggcgactacgtaacccacaccgactatggcatcggtcgctttgccggcctggagaaggtg
gaagtaggcgggcgtatgcaggaggcaatcaggctggtataccgcgacgatgacttgctt
tatgtgagcatccatgcgctgcacaaaataagcaagtacagcggcaaagaaggcggcccg
cccagtatgagcaagttgggttcgccggagtgggagaacaagaagaagaaggttaagagc
aaagttaaagacatagcacatgagctcatcagcctgtatgccaagcgaaaagctgcaccg
ggctatgctttcagccgtgatggctttctgcaggcagagctggaatcgtcgtttatttac
gaagacacaccggaccagggcaaggcaaccgaagatgtaaaggccgatatggaacagcca
cacccgatggaccgcctggtgtgtggcgatgtgggctttggtaagacagaggtcgccatc
cgtgccgcctttaaggccgcctgcgatggaaaacaggtggctgtgctggtgcccaccact
attctggctatgcagcatttccgaaccttccgcgacaggttagagcagttcccgattacg
gtagactacattaaccgctttaaaaccgccaaagacactaaagaaacccttaagcgtgta
gcagaaggcaaggtagatatcttgattggcacacaccgcattgtgagcaaagatgtgaag
tttaaggatcttggcctcatgattatagacgaagagcagaagttcggtgtaaaaacaaag
gacaagctgaaagaaatgaaggtaaatgtggacacgcttacgctaacagccacgcctata
cctcgtacactgcacttctcgctaatgggagcccgcgacctttctgtaatagccacacca
ccaccgaaccgccagcctgtaaaaacagaactacatgtgttcgacgaagcacttattcgt
gatgccgttgtgcatgagatgaaacggggcggacaggtgttctttgtgcacaaccgcatt
aaagacatcgaagaagtagccggtatgatcctgcgcctcgtgcctgactgcaaagtaacc
tacgcacacgggcaaatggaccctgagaagctggagaaacgcatgatgaagtttgtaaac
ggcgactacgacgtgctggtatctaccaatatcatagaatcagggcttgacatcgagaat
gccaataccattatcattaaccgcgcgcacatgttcggactttccgacctgcaccagatg
cgcgggcgtgttggccgttccaataaaaaggcttattgctacctcctgacaccacctgta
gccggtctgccttctgatgcccgcaagcgcctgagcactctagaggaattctccgatctt
ggggaaggttttaaaattgcgatgcgcgacctcgacattcgtggggcaggcaacctgctg
ggcggcgaacaaagtggctttattaccgacctcggctttgaaatgtaccaccaggtgctc
gacgatgccatcaaagaactgaaagaaacagaattcagggagctgttcctgggcgataac
ctggagcagttcatagagccggtgcgggagtgtaatatcgaaacagatatggaggtgctg
ataccggaaagctatgtcggtaacatttctgaacgcctgaacctttacagcaagctcgat
agcaccaaagacctacaggagctggaaaagctgcaaaacagcatcatagaccgctttggc
ccgctgccggaggaggtacaaaagctgattgagattgttaaactacgctggcaggcacag
cagcttggtttcgagaagctcaccatcaaaaaagaagtgatgaagggctacctgccttcc
gagaacaacgatgcttattttcagtcagaagtatttggcaatatcctgaagtatgtgcag
caacattcacgacgctcacgcctgaaggaagctaagaataagcttattgttattgtagaa
gacatccgcaatataaaagacgccaaagaagtatttgaaggcttaggggtggaagcagtt
gcctga
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