Pontibacter sp. SGAir0037: C1N53_18435
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Entry
C1N53_18435 CDS
T09933
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
pont
Pontibacter sp. SGAir0037
Pathway
pont02020
Two-component system
pont02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pont00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
C1N53_18435 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C1N53_18435 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pont03021
]
C1N53_18435 (rpoN)
Transcription machinery [BR:
pont03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C1N53_18435 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_12
LacI
MarR
HTH_IclR
SF3b1
Motif
Other DBs
NCBI-ProteinID:
QCR24140
LinkDB
All DBs
Position
4385295..4386743
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AA seq
482 aa
AA seq
DB search
MQRLDLRQLLSQKLSPQQIQFIKLLQIPTVELEARIKEEMEINPALEEGREDADTEYESD
NTDEYDSDDDYGNDEIDLNDYLHDDEISGYKMQGDKGGDDDEDREMPIAVSTSLIDSLFD
QLGFLALDDKQYNIGMQLIGSIDNDGYIRRDLSAIANDLAFSQNIETTEEEIEQVLHMIQ
TFDPAGIAARDLPECLLLQLQRREQDEITVLAERIITSAFDEFTKKHYQKIQSKFNVSED
TLKRAVDLIVKLNPKPGGSGAGMTRVQYIIPDFILTNENGQLQLSLNSRNAPDLRISRSY
SDMFDAYEKSDKKDKKLKETVTFVKQKLDAAKWFIDAIRQRQNTLLRTMEAIIKYQHEFF
LEGDESKLRPMILKDIAEEIGMDISTVSRVANSKAVQTEFGIYPLKYFFSEGIATDSGED
ASSREVKHILKEIIDKENKRKPLSDDKIEKMLNEKGYNIARRTVAKYREQLNIPVARLRK
EL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgactcgatttaaggcaactcttatcccagaagttatcgccgcagcagatacaa
tttatcaagctgctgcagatacctactgttgagctggaagcgcgcataaaagaagaaatg
gaaataaatccggccttggaagaaggacgggaagatgccgacacagagtacgagtcggat
aacaccgatgagtatgatagcgatgacgactatggcaacgacgaaatagatctgaacgac
tatctgcatgacgatgaaataagcggctataaaatgcagggcgataaaggtggcgacgac
gatgaagaccgtgagatgcctattgccgtttcaacttctctgattgattcgctgttcgac
cagctgggctttctggccctggacgacaagcagtacaatataggcatgcagcttattggc
agcattgataacgacgggtacattcgccgcgatctgagtgccattgccaacgatcttgcc
ttttcccaaaatatagaaaccacggaagaggagatagagcaggtcctgcacatgatccag
acattcgatccagcgggtatagcagcccgcgatttgcctgaatgtttgttgctgcaattg
cagcgacgggaacaggacgaaataacggttttggcggagcgcattattacttctgctttt
gatgagtttaccaaaaagcactaccagaaaatccagtcgaagtttaatgtatcggaagat
accctgaaaagagctgttgacctgattgtaaagctgaacccaaaaccaggcggctcaggt
gccggtatgacgcgggtgcagtatattatacctgattttattcttaccaacgaaaacggg
cagttgcagctgtcgcttaattcccgtaatgcacctgatctgcgcatcagccgctcttat
tccgatatgtttgatgcctatgaaaagtcagacaaaaaggataagaagctaaaagaaaca
gtaacgtttgtaaagcagaagctggatgccgccaaatggtttatagatgccatccgccag
cgccagaacacgctgctgcgtaccatggaggccattataaaataccagcatgagttcttt
ctggaaggagatgagagcaagctgcggcctatgatcctgaaagatattgcagaggagatt
ggtatggatatctctacggttagccgtgtggccaacagcaaagccgtacaaaccgagttc
ggcatttacccgctcaaatacttcttctccgaaggtattgccaccgattccggtgaagat
gccagcagccgtgaagtaaagcatattttaaaagagatcatcgacaaagagaacaagcgc
aagccgctatccgatgataaaattgaaaaaatgctcaacgagaagggctataatattgca
cgtcgcaccgttgccaaatatcgcgaacaactcaatatacctgtcgctaggctaagaaag
gagctgtag
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