Pontibacter sp. SGAir0037: C1N53_20340
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Entry
C1N53_20340 CDS
T09933
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pont
Pontibacter sp. SGAir0037
Pathway
pont03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pont00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1N53_20340 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pont03019
]
C1N53_20340 (recQ)
03400 DNA repair and recombination proteins [BR:
pont03400
]
C1N53_20340 (recQ)
Enzymes [BR:
pont01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1N53_20340 (recQ)
Messenger RNA biogenesis [BR:
pont03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1N53_20340 (recQ)
DNA repair and recombination proteins [BR:
pont03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C1N53_20340 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
RecQ-1-like_HTH
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
ESCRT-II
Motif
Other DBs
NCBI-ProteinID:
QCR24473
UniProt:
A0A4V1FD40
LinkDB
All DBs
Position
4838250..4840427
Genome browser
AA seq
725 aa
AA seq
DB search
MSLKEINLKNKLKEVFGYNQFRGNQELIINNIINGKNTFVIMPTGAGKSLCYQLPALSLP
GTAIVISPLIALMKNQVDQLNAFGVNAHFLNSTLSKAEINKVKKETLAGEVKLLYVAPES
LTKEETVEFLRNSNISFVAIDEAHCISEWGHDFRPEYRRIRGIIDQIGNLPIIALTATAT
PKVQIDIQRNLQMDEASVFKSSFNRTNLYYEVRPKHNTKKQLIQYVKKNKGKSGIVYCLS
RKKVEEIAELLRVNDVRALPYHAGLDASVRMANQDAFLNEEADVIVATIAFGMGIDKPDV
RFVIHYDTPKSIEGYYQETGRAGRDGLEGNCIMFYSYDDIIKLEKFNKDKPVTERDNSKL
LLQEMAAYADSAVCRRKQLLHYFGEAYEKDCGFCDNCLHPKERFEGQAEVQLALKAVQQT
GERFGIEHITAVLTGLRNQYTTSYDHDQLEVFGAGKENDAQFWSSVLRQILLSEFLEKDI
ENFGVVRLTQKGLDFIQHPHSFQLSKDHDYEQEVKQDEEKEETQAAAGHDEVLFDLLKNL
RKKLAKEKGLPPYVLFQDPSLKEMATVYPTTKEDLAHIAGVGMGKVQKFGKPFLDLIQKY
VDENDIVTAADVVVKTTVNKSKIKIYIIQQIDKKVDLEEIAASKDLTMQELIEEIEHICY
SGTKLNLNYYINNILDEERQDEIYDYFMQASTDNIAVALKELGTDDYTEEDLRLMRIKFL
SEYAN
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgtcacttaaagagatcaatctcaagaacaaattaaaggaagtttttgggtataatcaa
ttcagaggaaatcaggaactgataataaacaacattatcaacgggaagaatacctttgtg
attatgcctaccggtgcgggcaagtctttgtgttaccaattgcctgctctttcgcttcct
ggcactgctattgttatttcacctttgatcgccctgatgaaaaaccaggtggatcaactg
aatgcatttggtgtaaatgcacactttctgaactctacgctttcgaaagccgaaattaat
aaagtgaagaaggaaaccttggctggtgaagtaaagcttctatatgtggcgcctgaatcg
cttacgaaagaggaaacagtagaatttctgcgcaactccaacatttcttttgtagccatt
gacgaggcccactgtatttcggaatggggacatgatttccgcccggagtaccgccgcatc
cggggcattatcgatcagattggcaatctgcctattattgccctgacagctacagctacg
ccaaaggtgcagatcgatattcagcgcaacctgcagatggatgaagcttctgtgtttaaa
tcttcttttaaccgcactaacctgtactatgaggtgcgtccgaagcacaacaccaagaag
caactgatacagtatgtaaagaaaaataaaggtaaaagcggtattgtttactgccttagc
cgaaaaaaagtagaagagattgccgaactgcttcgtgtaaatgatgtgcgggctttgcct
taccacgccggattggacgccagtgtacgtatggctaaccaggacgctttcctgaacgaa
gaagctgatgtaattgtggctactattgcttttggaatggggattgataagccagatgtg
cgctttgtgattcactacgatacaccaaaatcgatagaaggctactaccaggaaacgggc
cgtgccggtcgtgacggactggaagggaactgtatcatgttctacagttatgatgatatt
atcaagctggagaagtttaataaagataagccggtaacggagcgggacaactctaaactg
ttgctgcaggagatggccgcctacgccgattcagcagtttgccgccgcaagcagttgctg
cactactttggtgaagcttacgaaaaagactgcggcttctgtgataactgccttcacccg
aaagaacgatttgaaggacaggcagaggtgcaactggcgcttaaagcggtgcagcaaaca
ggcgagcgctttggaattgagcacatcacagcagtattaacaggtttacgtaaccagtat
actaccagctacgaccatgatcagctagaagtgtttggtgccggaaaagaaaacgacgca
cagttctggagctcggtgctgcgccaaattcttctgtcggagttcctcgagaaagatatc
gagaactttggagtggtgagactgacacagaaagggcttgattttattcaacacccacat
tcgttccagctttcgaaagaccatgattatgaacaggaagtgaaacaggatgaggaaaaa
gaagaaacccaggctgctgccgggcacgacgaagtacttttcgacctgctgaagaacctg
cgcaaaaagctggcaaaggaaaaaggcttgccaccgtacgtgctgttccaggacccttcg
ctgaaagagatggccactgtttacccaactacaaaagaagacctggcacacattgcgggt
gttggtatgggcaaggtgcagaaattcggtaagccattcttagacctgatccagaagtat
gtagatgagaacgacattgtaacagctgccgatgtggtagtgaaaacaacagttaacaaa
tctaaaataaagatctacattattcagcagatagataagaaagtagacctggaagagatt
gcggcttctaaagacctgacgatgcaggaactgattgaagaaattgagcacatctgctac
tcaggaacgaaactaaacctgaactactacatcaataatattttagatgaggagcgccag
gatgagatttacgactactttatgcaggccagcaccgataatattgcggtagcgcttaaa
gagcttggcaccgatgactatacagaagaagacctgcgcctgatgcgtatcaagttcctg
tcagagtatgccaactaa
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