Pontibacter sp. SGAir0037: C1N53_20835
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Entry
C1N53_20835 CDS
T09933
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pont
Pontibacter sp. SGAir0037
Pathway
pont03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pont00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1N53_20835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pont03021
]
C1N53_20835
03019 Messenger RNA biogenesis [BR:
pont03019
]
C1N53_20835
Transcription machinery [BR:
pont03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C1N53_20835
Messenger RNA biogenesis [BR:
pont03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C1N53_20835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA_25
Exonuc_VII_L
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_16
AAA
AAA_14
Motif
Other DBs
NCBI-ProteinID:
QCR24561
UniProt:
A0A4P8RI21
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All DBs
Position
4951966..4953825
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AA seq
619 aa
AA seq
DB search
MYNIEELKDRLLSELKEIAEDLGVKNFKKLSKQEIIYKILDQQAITPPEKLPKKYKSPPR
PVTPEEVETPESTTEVAEVPEPESEAAPAPAPALRKQSRPERKPAPARAEAPAARVDVAA
PTVAQAPAAPAKDHGPQQGRERLRRDNRPEAREPRPERTENREPRAERVENRTERTDTRE
QQRPERPENQNQNRDRFERNENREPRPERTENREQRVERNDNRNDNNQRRFNQQQPQQAN
VSSNNFKEFDGIILNEGVLELMQDGYGFLRSTHYNYLASPDDIYVSPSQIKLFGLKTGDT
VKGQIRPPKEGEKYFALLKVETVNGRTTEEIRDRIPFQHLTPLFPEERLKLTTRPSQLST
RVLDLFAPIGKGQRGMIVAQPKTGKTVLLKEIANAITENHPEVYLMILLIDERPEEVTDM
ARSVKAEVIASTFDETAERHVKVSSIVLDKAKRMVECGHDVVILLDSITRLARAYNTVVP
SSGKILSGGVDANALHKPKRFFGAARNVENGGSLTIIATALIDTGSKMDEVIFEEFKGTG
NMELQLDRKLANRRIYPAIDVPASGTRREDLLMDKDELNRIWILRKFMSDMNSVEAMEFL
KDRMTGTKSNEEFLISMNG
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgtacaatattgaagaattgaaagataggcttctttcagaactcaaggaaattgctgaa
gacctgggtgttaagaactttaaaaagcttagcaaacaagaaatcatttacaaaatcctt
gatcagcaagccatcaccccacctgagaaactgcctaaaaagtacaaatctcctcctcgt
ccagttactccagaagaagtagaaaccccggaaagcacaactgaagtagcagaggtgcct
gagcctgagtctgaggctgcgccagctccggctccagctttaagaaagcaaagccgacca
gagcgtaaacctgctccggcaagagccgaggcccctgctgcccgtgttgatgtggcggct
cctactgtagcacaggctcctgccgcacctgcaaaggatcatggaccacaacagggaaga
gagcgtttacgccgcgataaccgccccgaagcccgcgaacctcgccctgaaagaacagag
aatcgtgagccacgtgccgaaagagtagaaaaccgtacagaacggactgatacccgtgag
cagcaaagacctgaacgccccgaaaatcagaatcaaaacagagaccgttttgaacgcaac
gaaaaccgtgagcctcgccctgaaagaacggaaaatcgcgaacagcgcgttgaaaggaac
gacaaccgcaacgacaataaccaacgtcgttttaaccagcaacaaccgcaacaggcgaat
gttagcagcaataactttaaagagtttgatggaataatcctaaacgagggtgttctggaa
ctcatgcaggatgggtatggcttcctgcgatccacacattacaactacctggccagcccg
gacgatatttatgtatcgccttcgcagatcaagttatttggccttaaaaccggagatact
gtaaaaggtcagatccgcccgccaaaagaaggagagaaatatttcgctcttttaaaggta
gaaacagtaaatggacgtacgacagaggaaatccgtgatcgtattccattccagcacctg
acaccgcttttcccggaagagcgcttaaagttaactacaaggccaagccagctttctacc
cgtgtgctggatctttttgccccgataggtaaaggacaacgcggtatgattgtcgcccag
ccgaaaacaggtaaaacggtattgctgaaagaaattgcaaatgcgattaccgaaaatcat
ccggaagtatacctgatgatcctgctgatagacgaacgtccggaagaggtaacagacatg
gcccgaagcgtaaaagcggaagtaatagcttctacattcgatgaaactgctgaacgccat
gtaaaggtatcgagcattgtgctggataaggcgaagcgtatggtagagtgcggacacgat
gtggttatcttattagactctattacccgtcttgcccgtgcttacaatactgtggtgcct
tcttctggtaaaattttatcaggtggtgtggatgccaatgcactgcacaagccgaagcgt
ttctttggtgccgcccgtaacgtagaaaacggcggttccttaactattatagcaacagcc
ctgatagacacaggttctaaaatggacgaggttatttttgaagagtttaaaggtactggt
aacatggagcttcagctggatcgcaaactggcgaaccgcagaatttatcctgctattgat
gtgcctgcttccggtacccgccgcgaagatctgttaatggacaaagatgaattaaaccgc
atctggattctgcgcaagtttatgtctgacatgaattctgtagaagctatggagttcctg
aaagacagaatgaccggcacgaagagcaacgaagaattcctgatttctatgaatggctaa
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