Polaromonas sp. Pch-P: F7R28_14340
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Entry
F7R28_14340 CDS
T06273
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
poo
Polaromonas sp. Pch-P
Brite
KEGG Orthology (KO) [BR:
poo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poo03019
]
F7R28_14340 (hrpA)
Enzymes [BR:
poo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
F7R28_14340 (hrpA)
Messenger RNA biogenesis [BR:
poo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
F7R28_14340 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
HA2_N
AAA_22
NACHT
AAA_19
T2SSE
nSTAND3
SRP54
AAA_30
AAA_23
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QGJ19451
UniProt:
A0A5Q3HJW5
LinkDB
All DBs
Position
complement(3090823..3094737)
Genome browser
AA seq
1304 aa
AA seq
DB search
MPPALSPLTITFPESLPVSGKRDEITAAMTAHQVIIVCGETGSGKTTQLPKIALAMGRGK
LNYPAGQGRLIGHTQPRRIAASSVAKRIAEELKTPLGDVVGYKVRFQDRLSRDASVKLMT
DGILLAETQTDPLLKAYDTIIIDEAHERSLNIDFLLGYLRQLLPRRPDLKVVITSATIDA
QRFADYFASAKGPAPVIMVSGRMFPVEQRYRPFEESREHDLNDAIADAVDELWLSPHSAG
DILVFLPGEREIREAADHLRKHLAHQPLTRNAEVLPLFARLSQAEQDRIFDGHSGRRIVL
ATNVAETSLTVPGIRYVVDAGTARVKRYSFRNKVEQLMVEPVSQAAANQRAGRCGRVADG
ICIRLYDEKDFQGRQPFTDPEILRSSLASVILRMKALHLGNVEEFAFIEPPQRRAIADGY
QLLAELGAVDADNELTAVGRTLAKLPLDPRVGRMILEAKDRNALDEVLVIASALSVQDVR
DRPMDKQAQADQQHAKFDDEKSEFSGYLKLWKWLGDARGGHGTDHKLSNRQYENLLRENY
VNIRRVREWRDIHSQLHTVVGEQKWVLNDKPASYEQLHLSMLCGLLGNIGCKSDEEDWYL
GARGIKFYRHPGARLSKKPGRWIVVAELVETTRLFGRGIANIDPAWIEQVAGHLLSKQLL
DPHWEKKAAQVTALERATLYGLVVYNGRRVNFGRVDPITAREIFIREALVAGNWDTKLPF
LAANLKLIQQVQDLEHKARRQDVLVDEELIYAFYDQQLPADVHSGASCEHWYKEESKKQP
RLLLLTREELMRHEAAGITTQSFPKTLRMGGVDCTVTYLHEPGDARDGVTVDVPLFALNQ
VNEERCEWLVPGMLKDKVQALIKTLHQRPRSRLVPLPDTAARMTEQLLQPEIFGAGSLTD
AVLKLVRDATSLDIKRNDMKLDMLPAHLFMNFRVVDEHGRQLGAGRNLGALKGELGSQAR
GAFQALAGLKNLAKAVEPEKFAGQGSSKDSASNRPPAQSGHGQSAIEKIAPRAPERYTGW
SFGELPELMEIRKGAQTLIGFPALIDLGDAVTIEVFDEPEAAAAKHRAGLRRLFSLQIKD
ALKYLEKNLPDLQKMATSYMLVGRAADNSGGGTLEELREQIIEVALDRAFLQEPLPTNEG
EFKKRIDDGRGRLTLIASEVARLAAGILVEFAVAQRKIKDSKNAAEAAADAAQQLQRLVP
KRFLTATPYGQLQHFARYLKAITLRLEKWRADPARDASRLVELRPQEQRYWRLVAERKGA
VDARMQEFRWLLEELRVSFFAQELRTPQPVSIKRLEKVWQQLNS
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
ttgccgcctgctttgtcccccctgaccatcacattccccgaatcgctgcccgtatcgggc
aagcgcgacgaaatcaccgccgcgatgacggcccaccaggtcatcatcgtctgcggcgaa
accggctcgggcaaaaccacgcagttgcccaagatcgcgctggccatggggcgcggcaag
ctcaattacccggcggggcagggccgcctcatcggccacacccagccgcgccggattgca
gcatcgagcgtggccaaacgcattgccgaagagctgaaaacaccgctgggtgacgtggtc
ggctacaaggtgcgtttccaggaccggctctcgcgcgacgcctccgtcaagctgatgacc
gacggtatcctgctggccgagacgcagaccgacccgctgctcaaggcctatgacaccatc
atcattgacgaggcccatgagcgcagcctgaacatcgactttttgctgggctacctgcgc
cagctgctgccgcgccggcccgacctgaaagtggtcatcacctcggcgacgattgatgcg
cagcggtttgcggattactttgcttcggccaaagggcctgcccccgtgatcatggtgtcg
ggtcgcatgttcccagtggagcagcgctaccgtccctttgaagagtcgcgcgagcatgac
ctgaacgacgcgattgccgatgcggtcgacgagctctggctgagcccgcacagcgcgggc
gacatcctggtatttttgcccggcgagcgcgagatccgcgaggcggcagaccatttgcgc
aaacacctggcgcaccagccgctgacgcgcaacgccgaggtgctgccgctgtttgcgcgc
ctcagccaggccgagcaggaccgcatttttgacggccacagcggccggcgcatcgtgctg
gccaccaacgtggccgagacctcgctgaccgtgcctggcatccgctatgtggtcgatgcg
ggcaccgcgcgcgtcaaacgctacagctttcgcaacaaggtcgagcagctgatggtcgag
ccggtgtcgcaggccgccgccaaccagcgtgcgggccgctgcggccgcgtggccgacggc
atctgcatacgcctctacgacgagaaagactttcagggtcgtcagcctttcaccgaccct
gaaattttgcgcagctcgctggcttcggtgatcttgcgcatgaaggcgctgcacctcggc
aacgtcgaggaatttgccttcatcgagccgccgcagcgccgtgccattgccgacggctac
cagttgctggccgaactgggcgccgtcgatgccgacaacgagctcacggccgtgggccgc
acgctggccaagctgccgctggatccgcgcgtgggccgcatgatcctggaagccaaagac
cgcaatgcgctcgacgaggtgctggtgattgccagcgcgctcagcgtgcaggatgtgcgc
gaccggcccatggacaagcaggcccaggccgaccagcagcacgccaagttcgacgacgag
aaaagcgagttcagcggctacctcaagctgtggaaatggctgggcgacgcgcgtggtggc
cacggcaccgaccataaactctccaatcgccagtacgagaacctgctgcgcgagaactac
gtcaacatccgccgcgtccgtgaatggcgcgacattcattcccagctccacacggtggtg
ggcgaacagaagtgggtcttgaatgacaagccggccagctatgaacagctgcatctgtcg
atgctgtgcggtttgctcggcaacatcggctgcaagagcgacgaagaagactggtacctg
ggcgcacgcggcatcaagttttaccgccatcccggcgcacgcctgagcaagaagccgggc
cgctggatcgtcgtggccgagctggtggaaaccacgcgcctcttcggccgcggcattgcc
aacatcgacccggcctggatagagcaggtcgccgggcatttgctcagcaaacagctgctg
gacccgcactgggagaaaaaagccgcgcaggtgacggcgctggagcgcgccacgctgtac
ggcctggtggtctacaacggccggcgcgtcaatttcggccgtgtcgaccccatcacggcg
cgcgagattttcatccgcgaggcgctggtggccggcaactgggacaccaaactgcccttc
ctggcggctaacctgaagctgatccagcaggtgcaggacctggagcacaaggccaggcgc
caggacgtgctggtggatgaagagctgatctacgccttctacgaccagcagttgcctgcc
gatgtgcacagtggtgcgagctgcgagcactggtacaaggaagagtcgaaaaagcaaccc
aggcttttgctgctgacccgcgaggagctgatgcgccacgaggcggccggcatcaccacg
cagtctttccccaaaaccctgcgcatgggcggcgtggattgcaccgtcacctacctgcac
gagcccggcgatgcgcgggacggcgtgacggtcgatgtgccgctgtttgcactcaaccag
gtgaacgaggaacgctgcgagtggctggtgcccggcatgctcaaggacaaggtccaggcg
ctgatcaagacgctgcaccagcgcccgcgctcacgcctggtgccgctgccggacacggcc
gcacgcatgacggagcagctgcttcagcctgaaatcttcggcgccgggtcgctgacggac
gcggtgctcaagctggtgagggacgccacctcgctggacatcaaacgcaacgacatgaag
ctggacatgttgccggcccacctgttcatgaactttcgggtggtggacgagcacggccgg
caactgggcgccgggcgcaatctgggggcgctcaagggcgagttggggtctcaggcgcgt
ggcgctttccaggcactggcagggctcaagaacctggcgaaggctgtcgagccggagaaa
ttcgccggtcagggctcttccaaagattcagcatcaaatcggcctccagcccaatcgggg
catggacaatctgctattgaaaagatagcgcccagggcgccggagcgctacaccggctgg
agctttggcgagctgccggagctgatggagatcaggaagggcgcccagacgctgatcggg
tttccggcgctgatcgacctgggcgacgcggtgacgattgaggtgtttgatgagccggaa
gctgctgccgccaaacaccgcgccggcctgcgcaggctgttttcgctgcagatcaaggac
gcgctgaagtacctggaaaagaacctgcccgacctgcagaaaatggcgaccagctacatg
ctggtgggccgcgccgccgacaactccggcggcggcacgctcgaagagctgcgcgaacag
atcattgaagtcgcgctggaccgcgctttcctgcaggagccgttgccgacgaacgagggt
gagttcaaaaaacgcatcgacgacggccgcggacgcctgacattgatcgccagcgaagtg
gccaggctggccgccggtatcctggtggagtttgccgtggcccagcgcaagatcaaggac
agtaaaaacgccgccgaagccgcagccgatgccgcccagcaactgcagcgcctggtgccc
aaacggtttttaaccgccacgccttacggccagctgcagcactttgcgcgctacctcaag
gccatcacgctgcgccttgagaaatggcgcgccgacccggcacgcgacgccagccgtctg
gtcgagttgcggccgcaagagcagcgctactggcgcctggtggccgagcgcaaaggggca
gtcgacgcccgcatgcaggaattcaggtggctgctggaagagctgcgggtgagttttttc
gcgcaggagttgcgcacgccgcagccggtcagtatcaaaaggcttgagaaggtctggcag
caactgaatagctaa
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