Polaromonas sp. Pch-P: F7R28_18510
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Entry
F7R28_18510 CDS
T06273
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
poo
Polaromonas sp. Pch-P
Pathway
poo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F7R28_18510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poo03019
]
F7R28_18510
03009 Ribosome biogenesis [BR:
poo03009
]
F7R28_18510
Enzymes [BR:
poo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
F7R28_18510
Messenger RNA biogenesis [BR:
poo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F7R28_18510
Ribosome biogenesis [BR:
poo03009
]
Prokaryotic type
rRNA processing factors
F7R28_18510
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
QGJ20186
UniProt:
A0A5Q3HK14
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All DBs
Position
3934000..3937179
Genome browser
AA seq
1059 aa
AA seq
DB search
MKRMLVNATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFAQGVPVSQARINDVIKEGQELLVQVEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKENMDQLEYPNGMSIIARTAGIGRSAPELQ
WDLNYLLKLWTAIDGAGKGGKGAYLIYQESSLVIRAIRDYFNSDIGDILFDTDDVYEQAK
QFMAHVMPEHEHRVKRYRDDAPLFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESRNRRDVENR
LRDALRQDRARVQFGTISKFGLMEMSRQRLRPALSEGASIPCPRCGGSGHIRDTESSALQ
ILRIIQEESLKDSTASVLCQVPVDVASFLLNEKRSEIAKIEVKQRINVLLVPNKTLETPN
YRLERLKHDDPRLDNIAASYKMADEIEDPTTVTRRSQEKHNKQEPIIKGVLPDAPAPVAP
PKPEPAPQAAAPKPQARTAPAVAAAPAEKGFFGWIKSLFGGAEAPAPAPVAKEVKKDERG
EGRREGRGGEGRGGERGERSERGGERGGRDGRRGGRGRSEGRGGEGRGENREGREPREPR
PEGQAPGRGEGRGGERRERNPEGRNEGGRQERPAGETRGEARPDNAGDGQPRSENAGREG
RGRRERGERGERGGERGGERIQRDAVEQDLALANQAAMAAAMGGDAGEPRQERAPQDGER
PQGNREPRGERAERGEGRRDRGDRNGRRNDRRGDRPEGAAEGQNAGAEGAAGFNPEAAAA
PVLDDAGNVIAPVQNGQGGDEQRQPRERRSRDRYGRDRRERGENGERNEQAPEAGAPAPQ
GEFFEPNQPQAQEQHAHAAPEFVADTAAAAPAPAPVAAPAPAYVAPVAVAAPVAAPAPAP
VQAAAAAAPAAASLPKVQSYDLPLQDLVQVAQSSGLQWVNSDAAKIAEAQAAIAAEVKPA
HVPRERPALVVDDEGPLVLVETKRDLGAVKLPFEQSTGQ
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctggtaaacgccacacaggctgaagaacgccgcctggcgatcgtcgat
ggacaaaaactcctcgactacgaaattgaaatcgaagggcgcgagcagcgcaaaggcaac
atctacaaggccgtcgtcacgcgcgtcgagccttcgctggaagcctgcttcgtcgactac
ggtgaagaccgccacggctttttgccgttcaaggaaatctccaaacaatactttgcccag
ggcgtgccggtcagccaggcgcgcatcaacgacgtcattaaagaaggccaggaactgctg
gtccaggtcgaaaaagaagaacgcggcaacaagggcgcagccctcaccaccttcgtctcc
ctggcaggccgctatgtggtcctgatgcccaacaacccgcgcggcggtggcgtcagccgc
cgcatcgagggcgaagaccgggccgagctcaaggaaaacatggaccagctggagtacccc
aacgggatgtccatcatcgcgcgcaccgccggcatcggccgcagcgcgcctgagctgcag
tgggacctgaactacctgctcaagctctggaccgccatcgacggcgccggcaagggcggc
aagggcgcttacctgatttaccaggaatccagcctcgtgatccgcgcgatccgcgactac
ttcaacagcgacatcggcgacatcctgttcgacaccgacgacgtctacgaacaggccaag
cagttcatggcccacgtgatgcccgagcacgagcaccgcgtcaagcgctaccgcgacgac
gcgccgctgttcagccgcttccagatcgagcaccagatcgagtcggcctacgcgcgcacc
gtgcagttaccctccggcggcgccatcgtgattgaccacaccgaagccctggtgtcggtc
gacgtcaactcggcccgcgccatcaagggcggcgacatcgaagaaaccgcgacccgcacc
aacctcgaagccgccgacgaagtcgcgcgccagatgcgtttgcgcgacctgggcggcctg
atcgtcatcgactttatcgacatggaagagtcgcgcaaccgccgcgacgtcgaaaaccgc
ctgcgcgacgcgctgcgccaagaccgcgcccgcgtgcagttcggcaccatcagcaagttc
ggcctcatggaaatgagccgccagcgcctgcgccccgccctgagcgaaggcgcgtccatc
ccctgcccgcgttgcggcggctccggccacatccgcgacaccgaaagctcggcgctgcag
atcctgcgcatcatccaggaagagtccctcaaggacagcacggcctcggtgctgtgccag
gtcccggtcgacgtggcgtctttcctgctgaacgaaaagcgctccgaaatcgccaagatc
gaagtcaagcagcgcatcaacgtgctgctggtgcccaacaagacgctggaaacccccaac
taccgcctggaacgcctgaagcacgacgacccgcgcctggacaacatcgccgccagctac
aagatggccgacgaaatcgaggacccgaccaccgtcacgcgccgcagccaggaaaagcac
aacaagcaggagcccatcatcaagggcgtgctgcccgatgcacccgcgcctgtggccccg
cccaagccggaacctgctccgcaggcagcagcacccaagccgcaagcccgcaccgcaccg
gccgttgccgcagcgcctgctgaaaaaggcttcttcggctggatcaagagcctgttcggc
ggcgcggaagccccggccccggcgcctgttgccaaagaagtgaaaaaagacgagcgcggc
gaaggtcgtcgtgaaggccgtggcggtgaaggccgcggcggcgaacgcggtgaacgttcg
gagcgcggcggtgaacgcggaggccgtgacggccgccgtggtggccgtggccgcagcgaa
ggacgcggcggtgaaggccgcggcgagaaccgcgaaggccgcgaaccgcgcgaaccacgc
ccggaagggcaagcccccggccgcggtgaaggccgtggcggcgagcgccgcgaacgcaac
cctgaaggccgcaacgaaggcggccgccaggagcgccccgccggtgaaacccgcggcgaa
gcccgtcccgacaacgccggcgacggccagccccgcagcgaaaacgccggccgcgaaggc
cgcggccgccgcgagcgcggtgaacgtggcgagcgtggtggtgagcgcggcggcgagcgc
atccagcgcgatgccgtcgagcaggaccttgcactggccaaccaggccgcgatggcagcc
gccatgggtggcgacgccggtgagccgcgccaggaacgcgcgccgcaagacggcgaacgc
ccacaaggcaaccgtgagccgcgtggcgaacgcgcagagcgtggtgagggccgccgtgac
cgcggcgaccgcaacggccgccgtaatgaccgccgtggcgaccgccctgaaggcgcagca
gaaggccagaacgctggcgctgaaggcgcagcaggcttcaaccctgaagcggcagccgcc
ccggtgctggacgacgccggcaatgtgatcgcccccgtgcagaacggccagggcggcgac
gaacaacgccagccgcgcgaacgccgcagccgcgaccgctatggccgtgaccgccgcgaa
cgcggtgaaaacggtgagcgcaacgagcaggctccagaagccggcgcacccgctccccaa
ggcgagttttttgagccaaatcagccgcaagcccaggaacagcatgcacatgctgctcct
gaatttgtagcagacacggctgcggcagcgccggctcccgcgcctgtcgcggcgccggct
cccgcctatgtggcacctgtcgctgtggccgcaccggttgcagcgccagcacccgcaccg
gtccaagccgctgcggccgctgcgccggccgcggccagcctgcccaaggttcagtcctat
gacttgccgctgcaagacctggttcaggttgcccagtcttcgggtttgcagtgggtcaac
tccgacgccgccaagatcgccgaagcccaggccgccatcgccgctgaagtcaagccggcc
cacgtgccgcgcgagcgcccagcgctggtggtcgacgacgaaggcccgctggtgctggtc
gagaccaagcgcgacctcggcgccgtgaagctgcctttcgagcaatcgaccggccagtaa
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