Populus trichocarpa (black cottonwood): 112323229
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Entry
112323229 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC112323229 isoform X1
KO
K03267
peptide chain release factor subunit 3
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112323229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
112323229
03012 Translation factors [BR:
pop03012
]
112323229
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112323229
Translation factors [BR:
pop03012
]
Eukaryotic type
Release factors
112323229
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
EF-G_D2
G-alpha
Motif
Other DBs
NCBI-GeneID:
112323229
NCBI-ProteinID:
XP_024448625
LinkDB
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Position
19:complement(10252182..10265495)
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AA seq
524 aa
AA seq
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MAEAPLLDIEEEVRSLQLDSADCASEINGVINPEDARPEEVEKVDEMEKDSDDKVTVSSQ
EVQAELPKVKDKEVPAPEDVEAVVEMEQYNKKRHLNVVFIGHVDAGKSTTGGQILFLSGQ
VDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAP
GHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLLVVVN
KMDEPTVNWSKERYDEIESKMIPFLKSSGYNVKKDVQFLPISGLMGTNMKTRLDKAVCPW
WNGPCLFEALDSIEVPPRDPNGPLRMPIIDKFKDMGTVVMGKVESGSVTEGDTLLVMPNK
TQVKVLAVFCDENKVRRAGPGENVRVKLSGIDDEDILSGFVLSSVARPIFAVTEFDAQLQ
ILELLDNAIFTAGYKAVLHVHSVVEECEIVQLLQQIDPKTRKPMKKKVLFVKNGAIVLCR
IQVNNLICVEKFSDFPQLGRFTLRTEGKTVAVGKVTELPSGSNF
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagcgcctctacttgatattgaggaggaggttcgctcattgcagcttgactca
gcagattgtgcatcagagataaatggggtgattaatcctgaagatgcaaggccagaagaa
gttgagaaggtggatgagatggagaaagattcagatgataaagtcactgtgagctctcag
gaagtgcaggctgagttgcccaaagtgaaagataaagaagtacctgcaccagaagatgtg
gaagcagtggttgagatggaacagtacaataagaagcggcacttaaatgttgtttttatc
ggccatgttgatgctggcaagtccaccactgggggccagatactctttcttagtggccag
gtggatgatcgcacaatccagaaatatgagaaagaagctaaggacaaaagtagagaaagc
tggtatatggcttatattatggacactaatgaggaggagagggttaagggcaaaactgtt
gaagttggaagagcacactttgaaacagagacaacaagattcacaattttagatgcaccg
ggtcacaagagctatgttccaaatatgattagcggagcatctcaggctgatattggcgtg
ctagttatttctgctcggaaaggagaatttgaaactggctatgagagaggtgggcagacc
cgtgagcatgttcaacttgcaaagaccttgggtgtttctaagctgcttgttgttgtaaat
aaaatggatgagccaaccgtgaactggtcaaaagaaaggtatgatgagattgaatcaaag
atgataccgtttcttaagtcttctggctacaatgtgaagaaagatgtccaattcctacca
atatctggtctaatgggcaccaacatgaaaacaagattggataaggctgtatgtccatgg
tggaatggcccatgcctttttgaagctcttgattctattgaagttcctccacgagatcca
aatggtcctttgaggatgcctattattgacaaattcaaggacatgggaactgttgttatg
ggcaaagtagagtctggtagtgtgacggaaggtgataccttgttggtcatgccaaacaag
actcaggtgaaagttcttgctgtgttttgcgatgaaaataaggtaagacgtgcaggacca
ggagaaaatgtgagggttaaattatctggaattgatgatgaggatatattgtcgggtttt
gttctttcaagtgttgcaaggccaatctttgcagttacagagtttgatgcccagttgcaa
atccttgagttactggataacgcaatttttacagctggctataaggctgtcttgcacgta
cattctgttgttgaggagtgtgagattgttcagctgctgcagcaaattgatccaaagact
aggaaacctatgaaaaagaaagtcctctttgtgaagaatggcgcaattgttctctgccgt
attcaggtaaacaatttgatatgcgttgagaaattctcagattttccacaactcggcagg
tttactcttcgtactgaggggaaaacagttgcagtgggaaaagtcacagaacttccttct
ggttctaatttttga
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