Populus trichocarpa (black cottonwood): 112324278
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Entry
112324278 CDS
T01077
Name
(RefSeq) putative RING-type E3 ubiquitin transferase C3H69 isoform X1
KO
K15687
E3 ubiquitin-protein ligase makorin [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
112324278
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112324278
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112324278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH_4
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
zf-CCCH_DUS3L
zf-C3HC4
zf-RING_2
zf-CCCH_RBM22
zf-CCCH_3
RING_XB3-XBAT31
zf-RING_5
zf-ANAPC11
zf-RING_UBOX
zf-CCCH_9
zf-CCCH_PARP12
zf-C3HC4_2
zf_Tbcl_2
FANCL_C
zf-rbx1
IBR_1
Motif
Other DBs
NCBI-GeneID:
112324278
NCBI-ProteinID:
XP_024441871
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All DBs
Position
1:28324790..28332133
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AA seq
360 aa
AA seq
DB search
MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGICSYGSRCRYEHVKPSRPE
STASSSLTVPCQPLGSNSVSLALPARNVSNGVTTVPGVPPELSSRPFIAPTAPEWNLESA
QHDFLEDGEVIEPRNVKPADRSICSFAAAGSCPRGDKCPHIHGDLCAYCGKHCLHPFRPE
ERDEHLKACEKKQKNLDLLKYSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCI
RNWRSSSPTSGMDVNTSLRACPICRKLSYFVIPSVIWYSSKEEKQEIVDTYKAKLRSIDC
KHFDFGNGNCPFGTSCFYKHAYRDGRLEEVVLRHLGTDDGQTVIAKNIWLSDFLGSLQIR
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaagggtactttgcaagttttttgctcatggggcatgcttgaaaggggagcat
tgtgaattttcacatgattggaaagatcctccaaataatatttgcaccttttatcaaaaa
ggtatctgctcttatggtagtcgatgccgatatgaacatgttaaaccttctaggcctgaa
tctactgcatcatcttcattgacagttccttgtcaacctctgggctcaaattccgtgtcc
ctggcccttcctgcaagaaatgtatcgaatggggtgacaacagtaccgggtgttcctcca
gagctttcaagtagaccctttattgctcccactgcaccagaatggaatttggagtctgca
caacatgacttcttagaagatggtgaggttatagagcctaggaatgttaaaccagctgac
cgatctatctgttcatttgctgctgctggtagttgtcctcgtggagataaatgcccccat
attcacggtgacttgtgtgcctattgtggaaagcattgcttacaccctttcagacctgaa
gaaagagatgaacatttgaaagcatgcgagaagaagcaaaagaaccttgatttgttaaaa
tatagtcaagaaatagaatgcagtgtatgcctggatcgtgtactttcaaagcccacggca
gctgaacgaaagtttggtctgctatcagaatgcgatcatccattctgcatatcatgtatt
aggaactggcgtagtagttccccaacctctggaatggatgtcaatacttcattgagggct
tgcccaatatgtcgcaagctttcatactttgtcattccaagcgttatttggtattcctct
aaagaggaaaaacaggaaattgttgatacctacaaggcaaaactcaggtcaatagattgt
aaacacttcgactttgggaatgggaactgcccatttggaaccagctgtttttacaagcat
gcatatcgagatggccgcctggaggaagttgttttacgtcatcttggaactgatgatgga
cagactgtgatagctaaaaatatctggctgtctgatttcctcggtagcttacaaataagg
tga
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