Populus trichocarpa (black cottonwood): 112327529
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Entry
112327529 CDS
T01077
Name
(RefSeq) acyl-CoA-binding domain-containing protein 4 isoform X1
KO
K20285
Rab9 effector protein with kelch motifs
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
112327529
Membrane trafficking [BR:
pop04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
112327529
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Gene cluster
GFIT
Motif
Pfam:
Kelch_KLHDC2_KLHL20_DRC7
Kelch_3
Kelch_4
Beta-prop_ATRN-LZTR1
Kelch_1
Kelch_5
Kelch_2
Kelch_6
NANM
DUF6242
DUF5323
Motif
Other DBs
NCBI-GeneID:
112327529
NCBI-ProteinID:
XP_024456970
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All DBs
Position
5:1023000..1026766
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AA seq
646 aa
AA seq
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MGSLGREASKKMEMWLYPKVSGFNPSERWGHSACYSHGVVYVFGGCCGGLDFSDVLMLNL
DTMVWNTLATTGQGPGPRDSHSAVLVGRQMIVFGGTNGSKKVNDLHILDLGTKEWISPEC
KGTPPLPRESHTATLIGDDRIMVFGGSGEGEANYLNDLHVLDLKSMRWTSPEVKGSIPAP
RDSHSAVEIGNKLFVYGGDRGDRYHGDVDVLDTDTMTWTKLVVQGSSPGVRAGHASVNIG
TKLYVIGGVGDKHYYNDVWVLDVSTCSWTQLDISGQQPQGRFSHTAIVTDLDIVIYGGCR
EDERPLNQLLVLQLGAEHPNGRYNISMCKIFGQHWNQEKRRFLPGSEDISQSMFLGNNEI
DMKGSYESEESKQPFQFSSDTLHHKKIRPTNSKAWEIDLEQEEHSLSPSHNSSPSQSDQE
QIPVQKSVDSLTSCKGLNFFRQLNKIPRNYQADSVASNQKLPRLVIQKTRHRLQISRENK
RVEQYVHAGFGRQGTPFPAVEHRPMEPGCIQNLVGAEVRGKVDGAFDSGLLMTATVNGKI
FRGVLFSPAPGFVSRGAILAQNHASPATQIPIVHQFPNSNHIDTLKPSHHPTTFSGQESS
HSSRQTQVTRTYPVIRAAPSLAKESNPRSDLQGVVLTLGGPASGHA
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atggggtctttgggacgtgaagcttcaaagaagatggaaatgtggctctatcctaaggtt
tcaggatttaatccttctgaaagatggggtcactctgcttgctactctcatggtgttgta
tatgtctttgggggatgttgtgggggtcttgatttcagtgatgttctaatgctaaatctt
gatacaatggtttggaacactctggcaaccacaggtcaagggcctggtccaagagacagc
cacagtgctgttcttgtggggcgtcaaatgattgtgtttgggggcactaatggctctaag
aaggtgaatgatcttcatatattggatcttgggaccaaggagtggataagccctgaatgc
aaagggactcctcctttgcctcgtgaaagtcacactgcaactttgattggtgatgataga
atcatggtgtttgggggaagtggagaaggtgaagcaaattatttaaatgatttgcatgtt
ttagacctcaagtccatgagatggacttctccagaggttaagggcagtattccggctcct
agggatagtcacagtgcggttgaaatcggtaataagctttttgtgtacggtggtgatcgt
ggtgataggtatcacggtgacgtggatgtgcttgatacagatacaatgacttggacaaag
cttgttgtgcaaggatcttcgccaggtgttcgagcaggtcatgcttctgtgaatattgga
acaaagctttatgtcattgggggtgttggggacaaacattactacaatgatgtttgggtg
cttgatgtgagtacttgttcatggactcaacttgatatatctggccagcaacctcaaggg
aggttttctcacactgcgattgtcaccgacttggatattgtcatctatggagggtgcaga
gaggatgagcgtcctctcaatcagttgttggtcttgcaacttggagcagaacatcccaat
ggtcgatacaacatttccatgtgcaagatctttggacaacattggaatcaagaaaagaga
agatttctcccaggatcagaagatatttcgcagtcaatgtttctgggaaacaatgaaata
gacatgaagggctcatatgaatcagaagaatcaaagcaaccttttcagttcagttcagat
actctgcatcataagaagataagacctacaaattcaaaagcatgggagattgatttagaa
caagaagagcattctctttcaccctctcacaattcatctccgtctcagtccgaccaagaa
cagataccggttcagaaatcagttgattccctcacatcttgcaaaggacttaatttcttt
aggcagttaaacaaaattccaagaaattaccaggctgatagtgttgcaagtaatcagaaa
ctacctagacttgtgatccaaaaaacccggcacaggctccaaatttcaagagagaataaa
agagtagaacaatatgttcatgctgggtttggcaggcaaggaacaccattcccagcagtg
gaacatagacccatggagccagggtgtattcaaaacctggttggtgctgaggttcgaggt
aaagttgatggagccttcgactcaggccttctaatgactgcaaccgttaatgggaagatt
ttcagaggggtcttgttttcacctgcacctggtttcgtatcgagaggggcaattctagct
caaaatcatgcatcaccagcaactcaaatccccattgttcatcaatttccaaactccaat
catattgataccttgaagccttctcatcatccaacaacattctcaggacaagaatccagt
catagttctcgacaaactcaagtgaccagaacatatccggtaatcagagctgctccatca
ttagccaaagaatcaaatccaagaagtgatcttcaaggtgtggttctaacactaggagga
cctgcaagtggtcatgcatga
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