Populus trichocarpa (black cottonwood): 127904395
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Entry
127904395 CDS
T01077
Name
(RefSeq) zinc finger CCCH domain-containing protein 41-like
KO
K13192
RNA-binding protein 26
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pop01009
]
127904395
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
127904395
03041 Spliceosome [BR:
pop03041
]
127904395
Protein phosphatases and associated proteins [BR:
pop01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127904395
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
127904395
Spliceosome [BR:
pop03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
127904395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_Nup35
DUF4407
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
127904395
NCBI-ProteinID:
XP_052303651
LinkDB
All DBs
Position
1:36473612..36481799
Genome browser
AA seq
971 aa
AA seq
DB search
MELKVSPLKTGGLSPAECISDPEEKEVSDEEDDDRNHKHRRRETRSQSLERDSLEPVSTR
PYRKHNKHFENGHPFRENESQARETWKNYNSVSLEKDYATKFERIRPDLMSLPRMPVDLN
QRIRLNQTFSGDPGPSRGRGREYGSWSQRDSRFSSVGIASQMAHLGPSLFAGRGLANVSN
VQSASWNAFGLMPRMSNGGLDTIHPIGLQGTLRPAVNSSLNMGIPHQRCRDFEERGFCLR
GDMCPLEHGVNRIVVEDVQSLSQFNLPVSLPRAQLPGTTSGLGAVPTVGAPPATLMNSKG
MHGKSNKPGIVDDGLGLNGAYTGSVSVSGGDLYDPDQPLWNDNGPETSSTLLAPHSPKFD
ETESMISVDPSDHNHARLRDGADNECPIRSTGIAVGFQGMNSSVWGRIGSLNNRLDVKEK
IDSTASMSSYMESESKEDQGALDNVHGTSHQGKCTNFDDCGTKTMDSPAKIHSDTMRHTR
KLSQKALRTLFVNGIPHKSNKRDALLSHFQKFGEVIDIYIPLNSERAFIQFSKREEAEAA
LRAPDAVMGNRFIRLWWANRDSIPDDATSRGVPATSGLPHLSIGNGGKDNLQLAISKTTV
VPTSDTSMPATDHPKVDITNGPEVSPPMQKKLENLEQLKEELRKKQELLDQKRNDFRRQL
HKLEKQATGVKGEVATEPASKRQKTGIASDVAKAATTRSADPGAGVASPHGGIVDKNKRM
ENIVSSSTKTSTVMALQESAGSKQSIHPLAPVGPPFLMNKYKLDNRPTAFKIISPLPAGL
ANVAALKEHFSSYGYLSSVELEDEPGDYDGDGNGDGSDTVKSCSARVTFATRRSAERAFL
NGKCWQGKNLKFEWLMTSTSSIGENSSAPKCLVHADVQPVKNLARLDSQEVSASGNGEPE
NPERNNGAGPTELDKASQCCSASISGEVESPKCEPSPKSISPEKESTETDPSQTAMSEKE
TPEGIFCLTMG
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggagctgaaagtttcgccactaaagacaggtggtctttctcctgctgaatgcattagt
gatcctgaggagaaggaagtcagtgatgaggaagatgatgatcgcaaccataagcatcgt
agacgagagacgcgttctcaatctttggagagagattctctggaaccagtttctacaagg
ccatacaggaagcataacaaacactttgaaaatgggcatcctttccgggaaaatgaatct
caagctcgtgaaacctggaaaaattataactctgtttctcttgagaaggactatgccaca
aagtttgaaagaatacgacctgacctaatgtcattaccccgaatgcctgtggatttgaat
caaagaatccggttaaaccaaacattttctggagatcctggtcctagcaggggaagagga
agggagtatggttcttggagccaacgtgattctaggttcagctcagttggcattgcttct
caaatggctcacctggggccaagcctctttgccgggagggggttggcaaatgtttcaaat
gtgcagagtgcatcctggaatgcttttggtttaatgccaagaatgtcaaatggtggcctg
gatacaatccatcccattgggttgcaaggaacactcagaccagcagtaaattcttcattg
aacatgggcattcctcaccagaggtgtagagattttgaggagcgcggattttgtttaaga
ggggacatgtgtccattggagcatggtgtcaatcgcatcgtggttgaagatgttcaaagc
ctttcacagtttaatctccctgtttcacttccacgtgcccaactacctggaacaacttct
ggactgggggctgtgccaacagttggtgcccctccagccacattgatgaatagcaaagga
atgcatggaaaaagtaacaagcctggaatagttgatgatggcttgggtctgaacggtgcg
tatactggttctgttagtgtgagtggaggagacttgtatgacccagatcagcccctgtgg
aatgacaatggtcccgaaacttctagtacactcttagcaccacattcacctaaatttgat
gaaactgaatccatgataagtgtggatccttctgatcacaatcatgccaggttacgtgat
ggtgctgataatgaatgcccaattagaagcactgggattgctgtgggttttcaaggcatg
aattcttctgtttggggtagaattgggtctttgaacaatagattagatgtgaaagagaaa
atcgattccacagcaagtatgtcaagttatatggagagtgaatccaaggaagatcagggt
gcattagacaatgttcatggtacttcccatcaaggaaagtgcactaattttgacgattgt
ggcacaaaaaccatggattcacctgccaagatacatagcgataccatgcgtcacacgcgg
aaactatctcaaaaggcactgcgaacactatttgtgaatggcattccgcataaaagcaac
aaaagagacgctctactttctcattttcaaaaatttggagaggttattgacatttatatt
ccattgaacagtgagcgagcatttattcagttttctaaaagggaagaggcagaagctgct
ctaagggcacctgatgctgtaatgggcaatcgttttatcagactgtggtgggctaatcgt
gatagcatacctgatgatgctacttcccggggtgttcctgctacttcaggtctaccccac
ctgtctattggtaacggtggaaaggataatcttcagttggctatttcaaagactactgta
gtccctacctctgatacttctatgcctgccactgaccaccctaaggtcgacatcacaaat
ggtccagaggtttctcctcctatgcagaagaagctagagaatttagaacaattgaaggag
gaacttcgcaagaaacaggagctgctggatcagaagcgaaatgactttcggcgtcagttg
cacaaacttgagaaacaagctacaggagtcaagggtgaggtagcaacggagcctgcttct
aagagacaaaaaactggaatagcatctgatgttgccaaagctgctactacgaggtctgct
gatccaggtgccggtgtcgcatcaccacatggtgggatagtggataagaacaaaagaatg
gagaatattgtgtcttctagtaccaaaacaagtacagtgatggctctgcaggagtctgct
ggctcaaagcaatcaattcatccattagcacctgttgggcctccttttttgatgaataaa
tacaagttggacaaccgacccacagcgtttaaaattatttcacctttaccagctggtttg
gcaaatgttgctgctttgaaggaacacttctcatcatatggttatctttcttccgtggaa
ctagaagatgagcctggtgattatgatggtgatggcaatggtgatggatcagatacagta
aaaagttgttcagctcgtgtgactttcgcaactcgcagatctgctgagagagcattcctt
aatggtaaatgttggcaaggcaagaatttgaagtttgagtggctgatgactagcacttct
agcattggagaaaactcatctgctcccaagtgtcttgtacatgctgatgtacagcctgtt
aaaaatctagctcgtttggattcccaggaagtttctgcatcaggaaatggagaacctgaa
aacccagagagaaataatggtgctggcccaacagagttggataaagcttcgcagtgctgt
tcagcctcaatttcaggtgaggtagagtcaccaaaatgtgagcctagtccaaagtcaata
tctcctgagaaagagtcaacagaaacggaccctagtcaaactgcaatgtcagagaaagag
acccccgaaggcattttctgtttgacgatgggttga
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