Populus trichocarpa (black cottonwood): 127904911
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Entry
127904911 CDS
T01077
Name
(RefSeq) structure-specific endonuclease subunit slx1-like
KO
K15078
structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
127904911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pop03400
]
127904911
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
127904911
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GIY-YIG
T5orf172
Motif
Other DBs
NCBI-GeneID:
127904911
NCBI-ProteinID:
XP_052305998
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All DBs
Position
1:27556144..27650128
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AA seq
178 aa
AA seq
DB search
MTRLLSQTFRSVKLKASSSKPPPPQQQQPSSSSSLPRSRKTRAKSSSNSKSRSWSVYLIL
STNHPIKTYVGVTTNFSRRLKQHNGELKGGAKASRAGRPWICACIIRGFNDRSEACKFES
KWKSFSRKFPRKRIDDDQMKQSRKDSHRLLQHRKTALDRVKGSFDLSHLEIDWKLNTF
NT seq
537 nt
NT seq
+upstream
nt +downstream
nt
atgacgaggttgctgtctcagacgttccggtctgtaaaacttaaagcatcctcatcaaaa
ccaccaccaccacaacaacaacaaccatcctcatcctcatcattgccccgatcaagaaaa
acacgagcaaaatcgagctcaaattcgaaatcgagatcatggtctgtgtatcttattctc
tctaccaaccacccgatcaagacttacgttggtgtcaccaccaatttctctcgccgcttg
aaacaacataatggcgagcttaaaggaggtgcaaaagcatcccgtgcaggaaggccgtgg
atttgtgcatgcataattcgcggttttaatgaccgaagtgaagcttgcaagtttgaatca
aaatggaaaagcttttcaaggaaatttcctcgaaaaaggatagatgatgaccagatgaag
cagagcaggaaggactcgcaccgactcctgcaacataggaagactgccctcgatagggtt
aaaggttcatttgatcttagtcacttagaaattgactggaaattgaatactttctga
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