Populus trichocarpa (black cottonwood): 127905189
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Entry
127905189 CDS
T01077
Name
(RefSeq) heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00900
Terpenoid backbone biosynthesis
pop01100
Metabolic pathways
pop01110
Biosynthesis of secondary metabolites
Module
pop_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
127905189
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pop01006
]
127905189
Enzymes [BR:
pop01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
127905189
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
127905189
2.5.1.29 geranylgeranyl diphosphate synthase
127905189
Prenyltransferases [BR:
pop01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
127905189
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
Motif
Other DBs
NCBI-GeneID:
127905189
NCBI-ProteinID:
XP_052308001
LinkDB
All DBs
Position
4:complement(19387135..19389479)
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AA seq
347 aa
AA seq
DB search
MVVSSLIAISSPLTTTIYLPVKSPNLYTKILGKMSKIQCSLSVSSQSKTAQFDLKTYWTT
LIGEINQELDQAVPIQYPDKIYEAMRYSVLAKGAKRAPPVMCVAACELFGGNRLAAFPTA
CALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTIYGVDMAILAGDALFPLGFSHIVSQTP
SDLVPEPRLLRVIAEIARAVGSRGMAAGQFLDLEGGPNAVEFVQEKKYGEMGECSAVCGG
LLAGATDDEIRRLRRYGRAVGVLYQVVDDILEAKTMKSKLDEEEKRKKGKSYVAVYGVEK
ATEVAEELRAKAKKELDGFEKYGESVVPLYSFVDYAADRGFSFGESI
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atggtggtatcttctcttatagcaatatcatcaccacttactactactatctacctccct
gtaaaaagcccaaatctttacactaaaatacttggcaaaatgtcaaaaattcaatgttct
ttatcagtttcaagccaatcaaagacagcgcagtttgatttaaagacttattggacaacc
ttgattggagaaatcaatcaggaactagaccaagctgttcctattcagtatccagataag
atttatgaggccatgaggtattctgttcttgcaaaaggtgctaaaagagcccctccagtt
atgtgtgttgctgcttgtgaactctttggtggtaatcgcctcgccgccttccctactgct
tgtgctcttgaaatggttcatgcagcttcgttgatccatgacgaccttccctgcatggat
gatgacccatcacgacgaggtcaaccttcaaaccacacaatttatggtgttgatatggca
atccttgctggggatgcgctcttccctcttggctttagccatattgtctcccagacgcct
tctgaccttgtaccagagccacgacttctccgcgtgattgctgagattgctcgtgctgtg
gggtccagaggcatggctgccgggcagttcctagaccttgagggcggccctaatgctgtt
gaatttgttcaagagaagaaatatggtgaaatgggtgagtgctctgcagtgtgtggagga
ttgctagctggtgctacggatgatgagatacggagattgaggagatatggaagagctgtt
ggtgtattatatcaagtcgttgatgacatcttggaagcaaaaacgatgaagagcaagtta
gatgaggaggagaagagaaagaaagggaagagctatgttgctgtttacggggttgagaag
gctacagaggtggcggaggagctgagagccaaggctaaaaaggaactggatggctttgag
aaatacggcgagagtgtagtgccactctacagcttcgtggactacgctgctgatagaggt
ttcagttttggcgagtcaatttaa
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