Populus trichocarpa (black cottonwood): 127905317
Help
Entry
127905317 CDS
T01077
Name
(RefSeq) syntaxin-112-like
KO
K08486
syntaxin 1B/2/3
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
127905317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
127905317
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pop04147
]
127905317
Membrane trafficking [BR:
pop04131
]
SNARE
Syntaxin (Qa)
Stx-PM
127905317
Exosome [BR:
pop04147
]
Exosomal proteins
Exosomal proteins of epithelial cells
127905317
Exosomal proteins of other body fluids (saliva and urine)
127905317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syntaxin
SNARE
CHD1-like_C
Motif
Other DBs
NCBI-GeneID:
127905317
NCBI-ProteinID:
XP_052308824
LinkDB
All DBs
Position
5:8990997..8992876
Genome browser
AA seq
296 aa
AA seq
DB search
MNDLMTRSFLSYVELKKQAQKDLQVELDIESGQPNLSQFFHEVNGIKTEMEDITNLLFDL
QNLNEESKSTHSAKVLRGLRDRMESDIVAVLRKAMIVKARLESLDRSNISNRRVSELYKE
GSPIDRTRISVTNGSRVKLREIMNEFHILRQKILSDYKNDLKRRYYTATGEEPSEEEIEN
MISGGGGVQMFEGKGVMDLKNKERHEVVMDIQRSLKRLHQMFLDMVVLIETQGEKMDDIE
ENVTNAGNFLSGGTNSLYHANQMKKKRKTWFLWVFAVMLIIIFVCIISETAWKGII
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatctaatgacaagatcgttcttaagttatgtggaactaaagaaacaagcccaa
aaggaccttcaagttgaactcgacattgaatcaggccaacccaacctctctcagttcttc
catgaagtcaacggaatcaagaccgaaatggaagatattaccaatctcttgtttgatctt
caaaaccttaatgaagagtcaaagtccactcacagtgccaaagttcttcgtggcttaaga
gaccgaatggaatcagacattgttgcagttcttagaaaggccatgattgtgaaggcaaga
ctggaatcacttgacagatccaatatatccaatcgcagagtatcagaattgtataaagaa
gggagtcctattgataggacaaggatatcagtcaccaatggctcgagagttaagcttagg
gaaattatgaatgaatttcacatcctgagacagaagattttatcagattacaaaaacgat
ctgaaaagaagatactacactgcgactggagaggaaccaagtgaagaagagattgaaaat
atgatttcaggaggtgggggagttcagatgtttgaagggaaaggagtgatggacttgaag
aataaagagaggcatgaggttgtgatggacatacagagaagcttgaaaaggctgcatcag
atgtttcttgatatggttgttcttattgaaacacagggagagaagatggatgacattgaa
gagaatgtgaccaatgcaggtaattttttaagtggtggaaccaacagtctttaccatgca
aatcagatgaagaagaagaggaagacatggtttttatgggtttttgctgtgatgttgatc
ataatttttgtttgcattatatcagagacagcatggaagggaattatttga
DBGET
integrated database retrieval system