KEGG   Populus trichocarpa (black cottonwood): 18093979
Entry
18093979          CDS       T01077                                 
Name
(RefSeq) autophagy-related protein 8f
  KO
K08341  GABA(A) receptor-associated protein
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop04136  Autophagy - other
Brite
KEGG Orthology (KO) [BR:pop00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04136 Autophagy - other
    18093979
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pop04131]
    18093979
   04121 Ubiquitin system [BR:pop04121]
    18093979
   03029 Mitochondrial biogenesis [BR:pop03029]
    18093979
Membrane trafficking [BR:pop04131]
 Autophagy
  Autophagosome formation proteins
   Atg8 conjugation proteins
    18093979
Ubiquitin system [BR:pop04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitin-like proteins (UBLs)
   18093979
Mitochondrial biogenesis [BR:pop03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    18093979
SSDB
Motif
Pfam: ATG8 APG12
Other DBs
NCBI-GeneID: 18093979
NCBI-ProteinID: XP_024461728
LinkDB
Position
1:complement(10050253..10053095)
AA seq 122 aa
MAKSYFKQEHGLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ
FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEDKKDEDGFLYVTYSGENTFGSQI
PL
NT seq 369 nt   +upstreamnt  +downstreamnt
atggcgaagagttacttcaagcaagagcatggtcttgagaagaggagggcagaggctgcc
aggatcagggagaagtacccagataggattcccgtgatcgtggagaaggcagaaagaagt
gatataccaaacatagacaagaaaaagtaccttgttccagctgacctgactgtaggacag
tttgtctatgttatccgcaaaagaatcaagttgagtgcagaaaaggcaatctttatattt
gtggataatgtcctcccacccacaggtgctatcatgtctgcaatatatgaggataaaaag
gatgaagacgggtttctctatgtgacctacagcggagagaacacttttgggtctcagatt
ccactgtag

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