Populus trichocarpa (black cottonwood): 18094225
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Entry
18094225 CDS
T01077
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
18094225
03015 mRNA surveillance pathway
18094225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18094225
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
18094225
5.6.2.5 RNA 5'-3' helicase
18094225
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
18094225
mRNA cycle factors
Common to processing body (P body) and stress granule
18094225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NPHP3_N
Helicase_RecD
nSTAND3
ATPase
PhoH
AAA_16
SRP54
AAA_22
AAA_25
Ribosomal_S13_N
AAA_32
AAA
Motif
Other DBs
NCBI-GeneID:
18094225
NCBI-ProteinID:
XP_024459301
LinkDB
All DBs
Position
1:12215342..12228323
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AA seq
1265 aa
AA seq
DB search
MDAQDNSLYETASQPDTATDAYTFLEFNTQGESDFDYPEFRSPVTWPTPSDSLAATSSSV
DPTSSDHRAAASNSDHHSDSPAASKSAARGGANSGTQGVVEGLVASMGGLNFEETGDDDG
YDFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEV
CLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWDLSQ
WCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPGVDDE
PQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFP
KEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDMNHGF
SVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVENQTVRSALPRRFGAPGLP
ELNASQVLAVKNVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ
LAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGEL
SSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECL
IPLVLGAKQVVFVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPS
LSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNR
TEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVD
SFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNS
LLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIIPNDNFGSVASASP
NADRRNSRARGSYMPPAPPNGTHKPGAHPAGFPMPRVPIPPFHGDPPSQPYAIPTRGAVH
GPIGAVPQVPQPGIRGFGAGRGNAGAPIGSHLPHQQGTQQGIGNIGSFNFSSLENPNSQP
SVGSALSQPGYNNIPVQGSSQTFRDGFSMGGMSQEFLGDDFKSQGSHVPYNVADFSTQAS
QSGYAVDYVTQGAQGGFPGNFLNQNSQAGFSRFGSGNDFMSQDYMAHGSQGLFTQVGFND
PSQDDASQSHFGIANPNQLQSQGLMNSLYSQPFAHYNTQPVNLQAPQQQSQQGQGTQNQK
IHYNG
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atggatgcccaagacaacagcctatacgaaacggcgtcgcagccagacacagcaacagac
gcctacaccttccttgaattcaacacacaaggcgaatccgattttgactaccccgaattc
cgctctccggtgacctggcccactccttccgactcacttgccgccacatcctcctccgta
gaccctacctcatccgaccaccgtgccgccgcttccaattccgatcaccactctgattca
cctgctgcgtcaaaatctgctgcgcgtggaggagcgaatagtgggacccagggggtggtg
gaggggttagtggcgagtatgggagggttgaattttgaagagacgggagatgatgatggg
tatgattttgggaaaggggattttacggagcacgcgtgtaggtactgtggggtttcgaat
cctgcgtgtgtagtgaggtgtaatgtgccgtcctgtagaaagtggttttgtaattcgaga
gggaatacctctggttcgcatattgttaatcatctggttcgagcaaagcataaagaggtc
tgtctccataaagacagccctctgggagaaacaatacttgagtgctacaactgtggttgc
cgaaatgtgtttcttcttgggtttatatcagccaagacagaaagtgttgttgtcctcctc
tgtagggaaccttgcttgaatgttaatgcactgaaggacatgaactgggacctgagccag
tggtgccccctaattgatgataggtgttttctacagtggcttgtgaagatcccatccgaa
caggagcagttgagggcacgccaaattagtgctcaacaaataaataaagtagaagaactt
tggaaaacaaatcctgatgccacccttgaagatcttgagaagcctggtgttgatgatgaa
cctcagcctgtagcattgaagtatgaagatgcatatcagtatcaaaatgtatttgctcca
cttattaagcttgaagctgactatgataaaatgatgaaagagtctcaaagcaaggataat
gtcactattcgatgggatattggcctgaacaagaagcgtgttgcatattttgtatttcca
aaggaggacaatgagttgcgccttgtacctggtgatgagttgcgactgcgctattctgga
gatgcagctcatccagcatggcaatcagttgggcacgtgatcaagctaactgcacaagag
gaggttgcactcgagcttcgtgctagtcagggagttcctgttgatatgaaccatggtttt
agtgttgattttgtttggaagagtacaagctttgaccgaatgcagggagcaatgaaaact
tttgcagtggatgaaaccagtgtcagtgggtatatataccatcacttgttgggccatgag
gttgagaatcaaacagttcgcagtgcattgcctcgccgttttggtgcacctggtctccca
gagctgaatgcatcacaagttcttgctgtgaagaatgtcctccagaagcctataagtttg
attcaaggtccacctggaacaggaaaaactgtcacttctgccgccattgtatatcatatg
gctaaacagggacaaggacaggttttggtgtgtgccccaagtaatgtagctgtagatcag
ctagctgagaagataagtgccaccggcttaaaggttgttaggctatgtgcaaaatcaagg
gaagctgttagttctcctgttgagcatctcacccttcactatcaggttagacatctagac
acttcagagaaaagtgaacttcacaagttgcaacagttgaaagatgagcaaggagaactg
tccagtagtgatgagaaaaaatacaaagctctgaaacgagcaacagaaagggaaatttct
caaagtgctgatgtcatctgttgcacttgtgttggtgctggagatcctcggttggcaaat
tttaggtttcgccaggtacttattgatgagtcaactcaggcgactgaaccagagtgtctc
attcctttggtacttggggcgaagcaggtcgtttttgttggtgaccattgccagcttggt
cctgtcattatgtgcaagaaagctgctcgtgctgggttagcccagtctctctttgagcgc
cttgttttacttggtgtgaaaccaattagattgcaggttcaatatcgcatgcacccatct
ctttctgaatttccatccaacagcttttatgaaggcactctgcaaaatggtgtgactgtc
aatgagagacagtcatcgggcattgatttcccttggcctgtgccaaatcgtccaatgttc
ttttatgtccagatgggacaagaagagataagtgccagtgggacatcctatctaaatcgt
accgaggctgcaaatgttgaaaaaattgtaactacgtttttgaggagcggtgtagtccct
agccagattggagtgataacaccttatgagggacagagagcatatattgtgaattatatg
tcaagaaatggtgccctcagacagcaactatacaaggaaattgaggttgcaagtgttgat
tcatttcaaggaagggaaaaggactacattattttgtcttgtgtcaggagcaacgaacat
cagggcattggatttcttaatgatcctcggagattgaatgtagctctaacccgtgctcga
tatggtattgtcatcttgggaaaccctaaagttctaagcaagcagcctttgtggaatagc
ttattaactcactacaaggaacatgagtgcttggttgaaggacctttgaataacttgaag
cagagtatggttcaatttcaaaagcccaaaaagatttataatgataggaggcttttcttt
ggtggtggacctggaattatccctaatgataattttgggtctgttgcctcagctagccca
aatgctgatagaagaaactcccgtgccaggggatcttatatgccacctgccccacccaat
ggtacccacaagcctggtgctcatcctgctgggtttccaatgcctcgggtccccattcca
ccatttcatggtgatccaccttctcaaccatatgctattccaactcgtggagctgtgcat
gggccaattggagctgttcctcaagtccctcagccaggaattcgaggttttggtgctggg
cgcggcaatgctggtgcacctattggaagtcatctcccacaccagcaaggcactcagcaa
ggcattgggaacattggatctttcaatttttcttccctggagaatccaaatagccagcca
tctgtgggtagtgcattatctcagcctggatataataatattccagttcagggatcgagc
caaacatttcgtgatggattttccatggggggtatgtcccaggagttcttgggtgatgat
ttcaaaagccagggatcgcatgttccttacaatgttgctgatttctccactcaggcatct
caaagtggatatgctgtggattatgttacacaaggagcccaaggtgggtttccaggcaac
ttcttgaatcagaattctcaagctggattttctcgttttggttctggaaatgatttcatg
tctcaggattacatggctcatggatcacaagggctattcactcaggttggctttaatgat
ccctcacaagatgatgcatcgcaaagccactttggcatagccaatccgaaccaacttcaa
tctcagggcttgatgaattctctttactctcagccctttgcccactacaacactcagccg
gtgaacttacaggctccacaacagcagtctcagcagggtcagggcacccaaaaccagaaa
atccattacaacggttga
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integrated database retrieval system
