Populus trichocarpa (black cottonwood): 18094411
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Entry
18094411 CDS
T01077
Name
(RefSeq) deoxyribodipyrimidine photo-lyase isoform X1
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pop03400
]
18094411
Enzymes [BR:
pop01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
18094411
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
18094411
Prokaryotic type
18094411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_photolyase
Motif
Other DBs
NCBI-GeneID:
18094411
NCBI-ProteinID:
XP_006368713
UniProt:
U5GVC3
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All DBs
Position
1:9494375..9498512
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AA seq
502 aa
AA seq
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MASLSSPPTQNTIVQPGRIRVIKEGSRGQVGGGPVVYWMFRDQRLQDNWALIHAVDQANR
SNVPVAVAFNLFDQFLGAKARQLGFMLRGLCQLQSHIEETLQIPFFLFLGEAEETIPAFL
KDCGASLLVTDFSPLRQFRTCQDEICKRVSDSVTIHEVDAHNVVPIWVASEKLEYSARTL
RGKINKLLPEYLIDFPMLQLPKNKWVAATKQSIDWNDLIDNVLRKGAEVPEIKWCEPGED
AAMEVLMGSKDGFLTQRLKNYSTDRNNPLKPKGLSGLSPYLHFGQISAQRCALEARKVRN
LSPQSADAFLEELIVRRELADNFCFYQPNYDSIHGAWEWARKTLADHASDKREHIYSKEQ
LEKAQTADPLWNASQLEMVCHGKMHGFMRMYWAKKILEWTRGPEEALAISIYLNDKYEID
GRDPGGYVGCMWSICGIHDQGWKERPIFGKIRYMNYAGCKRKFNVDGYITYVKRIVGDIK
KRKAENELHKTMKELPKPMSRR
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atggcctctctatcttccccgccaacccaaaacaccatcgtccaaccgggacggatccgg
gtcatcaaagaaggatccagagggcaagtgggcggtggtcctgttgtttactggatgttt
agagatcaacgacttcaagacaactgggctttgatccatgccgttgatcaggctaacagg
agcaatgtgcctgtagctgtggcattcaatttgtttgatcagttcttgggggccaaagca
agacaattagggtttatgttaaggggtttgtgtcagcttcaaagtcatattgaagagaca
cttcagatcccatttttcttgttcctgggagaagctgaagagactataccagcattctta
aaagactgtggggcttcacttttagttactgatttttcacctcttagacaatttcgtaca
tgccaagatgaaatttgtaagagagtaagtgattcagtgaccatacatgaagttgatgct
cataatgttgtacctatttgggtggcgtcagagaagttggaatacagtgctaggacttta
aggggtaagataaataaattgctacctgagtacctcattgatttcccaatgttacaactg
ccgaagaacaagtgggttgcagctacaaagcagtcaattgattggaatgatctcattgac
aatgttttgaggaaaggggcagaagttcctgaaatcaaatggtgtgagccaggagaagat
gcagcaatggaagtgttgatgggaagtaaagatggattcttgacgcaaaggttgaagaat
tattctacagataggaataacccactaaaacctaaagggctctccggtctgtctccatat
cttcattttgggcagatttctgcacagcggtgtgccttggaggcacgtaaagtgaggaat
cttagccctcagtcagccgatgcatttttggaggagttgattgtgcgtagagaacttgcg
gacaacttttgcttttaccagcccaattatgattccatacatggggcatgggagtgggca
cgtaagaccttggctgaccatgcttctgacaagcgagaacatatttactcgaaagagcaa
ttagagaaggcacagacagctgatcctctttggaatgcttctcagctggagatggtttgc
catgggaagatgcatggtttcatgcgtatgtattgggcgaaaaagattcttgagtggaca
agagggcctgaagaagcccttgcgatatccatatatctaaatgacaagtatgagatagat
gggagggatccaggtggatatgttggttgcatgtggtcaatatgtggcatccacgatcag
ggttggaaagagcgaccgatttttgggaaaatacgttatatgaactatgcaggctgcaag
cggaaatttaatgttgatggatacatcacttatgtcaagagaattgtgggcgacattaag
aagagaaaagcggaaaatgagctccacaaaacaatgaaggagctccccaaaccaatgagt
cgccgctga
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