Populus trichocarpa (black cottonwood): 18094417
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Entry
18094417 CDS
T01077
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB5
KO
K10845
TFIIH basal transcription factor complex TTD-A subunit
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03022
Basal transcription factors
pop03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
18094417
09124 Replication and repair
03420 Nucleotide excision repair
18094417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
18094417
03400 DNA repair and recombination proteins [BR:
pop03400
]
18094417
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
18094417
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
18094417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb5
Motif
Other DBs
NCBI-GeneID:
18094417
NCBI-ProteinID:
XP_006368720
UniProt:
B9N3L1
LinkDB
All DBs
Position
1:complement(9418284..9419653)
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AA seq
70 aa
AA seq
DB search
MVNATKGLFISCDIPMAQFIINLNASLPASQKFIIHILDSTHMFVQPHVSDMIRSAISDF
REQNSYEKPS
NT seq
213 nt
NT seq
+upstream
nt +downstream
nt
atggttaatgccactaaagggttgttcatatcctgtgacatacctatggcacaattcatc
atcaatttgaatgcttcactaccggcatcacagaagttcatcattcatattttggacagc
actcacatgtttgtccaaccgcatgtgtctgatatgatacgaagtgcaatttcagacttc
agagagcagaattcctacgagaagccctcttaa
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