Populus trichocarpa (black cottonwood): 18094535
Help
Entry
18094535 CDS
T01077
Name
(RefSeq) probable CCR4-associated factor 1 homolog 6
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18094535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18094535
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18094535
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
18094535
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
18094535
NCBI-ProteinID:
XP_024453230
LinkDB
All DBs
Position
1:complement(3453536..3454945)
Genome browser
AA seq
274 aa
AA seq
DB search
MSLLLKGDSILIREVWNDNLEEEFAHIREIVDDFPYIAMDTEFPGIVLRPVGNFKNSNDY
HYQTLKDNVDMLKLIQLGLTFSDEQGNLPTCGTDKYCIWQFNFREFNVNEDVFANDSIEL
LRQSGIDFKKNNENGIDAVRFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCQNLP
DTQAGFFNLINMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTA
CTFRKLKENFFSGSLEKYAGVLYGLGVENGQNTH
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttgttgctaaaaggtgattctattctaattcgtgaggtgtggaatgacaatctc
gaagaagaattcgcgcatatccgtgaaatagttgatgatttcccttatattgccatggac
acggagtttccgggcattgtgttgcgtccggtgggtaattttaagaatagtaatgactat
cattaccagactttgaaggataatgtggatatgttgaagttgattcaattgggtcttacc
ttctcagatgagcaagggaatttaccaacttgtggcacggataagtattgcatctggcag
tttaatttccgtgagttcaacgtgaacgaggatgtttttgcaaatgattcgattgaactt
ttgcggcagagcgggattgactttaagaagaacaatgaaaacggtattgatgctgtcaga
tttggtgagctcttgatgtcgtctgggattgtgttgaatgataacgtgtactgggtgaca
tttcatagtggttatgattttgggtacttgcttaagctgttgacttgccagaatttaccg
gatacacaagcagggttctttaatttgatcaacatgtactttccaactctttatgatatc
aagcatttaatgaagttttgcaatagtcttcatggagggttgaacaagcttgcagagttg
ttagaagtggaaagagttgggatatgccatcaagcaggttcagatagtttgcttacagct
tgtacattcaggaagttgaaagagaatttctttagcggctccttggaaaagtatgctggt
gtgttgtatggtttaggtgttgagaatggacaaaatacccattga
DBGET
integrated database retrieval system
