KEGG   Populus trichocarpa (black cottonwood): 18094546
Entry
18094546          CDS       T01077                                 
Name
(RefSeq) DNA repair endonuclease UVH1 isoform X1
  KO
K10848  DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03420  Nucleotide excision repair
pop03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    18094546
   03460 Fanconi anemia pathway
    18094546
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pop03032]
    18094546
   03400 DNA repair and recombination proteins [BR:pop03400]
    18094546
DNA replication proteins [BR:pop03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    18094546
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     18094546
SSDB
Motif
Pfam: ERCC4 CARD
Other DBs
NCBI-GeneID: 18094546
NCBI-ProteinID: XP_024447640
LinkDB
Position
1:12565559..12570690
AA seq 1000 aa
MVQFHEHIITDLLEDPAGGLVILSSGLSLPKLVSSLLSLHSPSQGTLLIFSPPPTLKSLI
LHHHNTNPNPIEITADLPSHHRLSLYSSGQICFITPRILIVDLLSNKIPTSSLAGLIILN
AHSISETSTEAFIVRILKSSTQNRNQNNSNVFYIRAFSDRPQAMVSGFCKTERLMKCLFI
RRLHLWPRFQVYVSQELEKDPPEVVDVRVPMSKYMVGIQKAILEVMDACLKEVRKSNKVD
VEDLTVENGLFKSFDEIVRRQLDPIWHTLGKKTKQLVSDLKTLRKLLDYLVRYDAVSYLK
YLDTLRVSQSFQSVWIFAEPSYKIFDYAKKRVFRLTRSSDVKLNEQSKNKVGKKRKLKGD
DSNEGEADGTSSSTTSSGVVLEEVLEEAPKWKVLREILEEIGEERQRVESGEEDQVESEG
VDNGIVLVACKDECSCMQLEDCIMHSPRKYIFLMKVLQEEWKKYLLSKVELGGLPAPEKK
KAKLKPKEPKGFGILDGVVPVTTVQSAEASSTNKQEHDVLLVAASKIRNQYKRGLVVEDE
LQPLADSSKKGAKEKGKEHKKRGQATGQDSGSKDNDSNIDTVIKDLPEISGSKNKSQTVE
NDQAAIDGYYEANLQRASVNKGALQRHAEELGLTGSRNAKPIPPVHFHALESDQPILDIL
KPSVVIVYHPDMMFVREIEVYKAENPSKKLKVYFIFYEDSTEVQKFEASIRRENGAFESL
IRQKSLMMIPVDQNGHCLGLNVSIEPLGSSYQNSTRRAGGRKEIEKEMQVIVDMREFMSS
LPNVLHQKGMSIIPVTLEVGDYILSPSICVERKSIQDLYMSFTSGRLYNQVETMVRYYRL
PVLLIEFSQDKSFSFQSASDIGDDVTPNSIISKLSLLALHFPRLRIIWSRSLHATAEIFA
SLKANQDEPDEMKAVRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRAIMDG
CKSLAELTLLPVEKLAELMGGQKAARTLRDFLYAKYPTLL
NT seq 3003 nt   +upstreamnt  +downstreamnt
atggtccaattccacgaacacataataacagacctcttagaagaccccgccggcgggctc
gtaatcctttcatctggtctatccctcccaaaactcgtctcctccctcctctccctccac
tccccttctcaaggcacgcttttaatcttctcccctcctcccacccttaaatccctaatt
ctccaccaccacaacacaaacccaaaccccatcgaaatcaccgccgatctcccctctcac
caccgcctctccctctactcctccggccaaatatgcttcatcactccccgtatcctcatc
gtcgacctcctctccaataaaatcccaacctcctctctcgccgggttaatcatcctcaac
gctcactccatctcagaaacctccaccgaagcattcatagttagaattttaaaatcctct
actcagaatagaaatcagaataatagtaatgtgttttatatccgcgcatttagtgatagg
ccacaggcgatggtgtctggtttttgtaagacggagaggttaatgaagtgtttgttcata
agaagattgcatctttggccgaggtttcaggtttatgtgtcgcaggaattggagaaggat
ccgccggaggttgtggatgtgagggttccgatgagtaagtacatggtggggatacagaag
gcgattttggaagttatggatgcttgtttgaaagaagtgagaaagagtaataaggttgac
gtagaagatttgactgttgagaatgggctgttcaagtcttttgatgagatcgtgaggaga
cagttggatcctatttggcataccttggggaagaaaactaaacagctcgtttcggatttg
aagacattgaggaagttgctggattaccttgttaggtatgatgcagtaagttatttgaag
tacttggatacgcttagggtgtcacagagttttcagtctgtttggatatttgcagaaccc
agctataagatatttgattatgcaaagaagcgtgtattccgtttgacaagatcaagtgat
gtgaaattaaatgagcagagtaagaacaaagtaggaaaaaagagaaaattaaagggtgat
gacagtaacgagggagaagctgatggtacttcgtcctcaactacaagtagtggggttgtg
ttggaggaagttctggaggaggcaccaaaatggaaggtgttacgtgagatacttgaagag
ataggggaagaaagacaaagggttgaaagtggagaagaagatcaggttgaaagtgaaggt
gttgataatggcattgttctggtggcatgcaaagatgaatgctcatgcatgcagcttgaa
gattgcatcatgcacagccctcgaaagtatatttttcttatgaaggtgttgcaagaagaa
tggaagaagtacttgttgagcaaagttgagctaggtggcttgccagcacctgagaaaaag
aaagcaaaactaaagccaaaggagcccaaaggatttggaattcttgacggagttgttcct
gtaacgactgtgcaaagtgcggaagctagcagcacaaacaagcaggaacatgatgttttg
ttggttgcagcatcaaaaataagaaatcagtataaaaggggactggttgttgaagatgaa
ctgcagcctcttgctgacagcagcaagaaaggtgcaaaagaaaagggaaaagaacacaag
aaaagaggccaagcaactggtcaggattctggaagcaaagacaatgacagcaatattgat
acggtgataaaagatttgccagaaatatctggttcaaaaaacaaaagccagacagttgaa
aatgatcaagctgccatagatggttattatgaagcgaatttgcagcgggcatctgtcaac
aaaggggctcttcagagacatgctgaagagctaggccttacaggatctcgaaatgccaag
ccaataccaccggtgcactttcatgctctggaaagtgatcagcctatacttgacatctta
aagccttctgtagttattgtttatcatccagacatgatgtttgtccgggaaattgaagtc
tacaaagctgaaaatccctcaaaaaagttgaaggtgtattttattttctatgaggattct
actgaggtccaaaagtttgaggctagtattcgcagggagaatggagcatttgaatctttg
atcaggcagaaatcgctgatgatgattccagttgatcagaatggacattgcttaggattg
aatgtttccatagagccactaggttcaagttaccaaaactcaaccagaagggctggtggg
agaaaggaaattgagaaagaaatgcaggtcattgtagacatgagggagttcatgagtagc
ctcccaaatgttctccaccagaaaggaatgagcataataccagttacattggaagttggg
gattatattctctcaccgtcaatatgtgtagagaggaagagtatccaagatctttatatg
agctttacatcaggccggctttacaaccaagtggaaacaatggtgcgctattatcgatta
cctgtccttctgattgagttttcacaagataaaagcttttcatttcagtctgcaagtgat
attggtgatgatgtcacaccaaatagtattatatccaagctgtcattgcttgctctacat
tttccccgcctgcgaatcatctggtcacgcagtttacatgctacagctgaaatatttgct
tcgctgaaggcaaatcaggatgaacctgatgagatgaaggcagttagagttggtgtcccg
tcggaggatggtattgtggaaaatgatgttagagcggagaactacaatacatctgctgtg
gagtttctgagacggctcccgggggtcacagattcaaactacagggctataatggatgga
tgtaagagcttagcagaactcacacttcttcctgtagagaagctagctgaactaatgggt
ggccagaaggctgccaggactctcagagacttcctttacgcaaagtacccgaccttgtta
taa

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