Populus trichocarpa (black cottonwood): 18094624
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Entry
18094624 CDS
T01077
Name
(RefSeq) protein transport protein SEC16B homolog isoform X1
KO
K20353
COPII coat assembly protein SEC16
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
18094624
Membrane trafficking [BR:
pop04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
18094624
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
Motif
Other DBs
NCBI-GeneID:
18094624
NCBI-ProteinID:
XP_024449761
LinkDB
All DBs
Position
1:13325137..13333208
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AA seq
1414 aa
AA seq
DB search
MATNPPFNVMEDQTDEDFFDKLVDDDFGPPNLDSGPKFTEGSDSDEAKAFANLSIEDTKG
GFEGKVENDGAGLDGVKAEESNALESVNSLGLSDGVIESNNDGIGSEVVPETTVCQSSGS
LKSGVKEVGWGSFYADSADNGNHGFGSSSDFFNDFGGGSEDFPANIVQSASNVENRGGGG
LDNSVSYEQYQDGSQVYGGSVMESVNGLDLSSSQYWENMYPGWKQDANTGQWYQVDAFDA
TASMQGSADGALGVECVAASASISDGKKEVNYLQQTSQSVVGTVAETSTTESVSSWNQVS
QGNNNGYPEHMVFDPQYPGWYYDTMVGEWRSLDSYTPSAQSSTVQTNDQQNQNGFAFSNP
YSPNSSSMNAEYGQADKYGYQGYNNQGLHGSGGESYGSYNQQGLNMWQPQTAAKTDTISN
FGGNQQLENLYGSNVSMNNHVDQQNAFNYSGTVPSYDKASQGYAEANGFVGSQSFVHGGN
FSQKSNQETVKQNEQAIFSNDYFSSQKQASVPHQSFQSNQQFSYAPNTGRSSAGRPPHAL
VTFGFGGKLIVMKDSSSLRKTSFSSQDHVGGSISVMNLMEIILGSSDNASSVGGGTCSYF
HALCQQSFPGPLVGGNVGNKELNKWIDERIAHCESLGVNQRKGEVLRLLLALLKIACQHY
GKLRSPFGTDNLLKESDAPESAVAKLFASAKKNSTHFSEYGALDHCLQNMPFEGQIRATA
SEVQHLLVSGRKKEALQCAQEGQLWGPALVLASQLGDQYYVDTVKLMALRQLVAGSPLRT
LCLLIAGQPAEVFSTDSNVHGGFPGDLSIPQQPVQFGANRMLDDWEENLAVITANRTKDD
ELVLMHLGDCLWKDRSEITAAHICYLIAEANFESYSDTARLCLIGADHWKHPRTYANPEA
IQRTELYEYSKVLGNSQFILLPFQPYKLIYAYMLAEVGKVSDSLKYCQAVLKSLKTGRAP
EVETWKLLVLSLEERIRAHQQGGFTTNLAPGKIVGKLLNFFDSTAHRVVGGLPPPAPSAS
QGSVPDSHHQLVAPRVSGSQSTMTMSSLISSASTEPISEWAADGNKMTMHNRSVSEPDFG
RSPIQYQADSSTQGTPSSTQSKASGSVGSSRFGRFGFGSQLLQKTVGLVLRPRSDKQAKL
GEKNKFYYDEKLKRWVEEGVEPTAEAAALAPPPTTLGFQNGGSDYNLKSALKNEVSPTDG
NSTFKSPTSTDHPSGIPPIPASSNQFSARGRMGVRARYVDTFNQGGGKPANLFQSPSVPS
VKPAVASNAKFFVPAPAPAPAPSLEYSMEAIAENIQEDSATTEKPSTFNMKENDYPQPST
SSSAMAMQRFPSMDNITRKGGMINGKDLVSSNSRRTASWSGSFSDSFSPPKVMESKSPGE
ALGMTPSSFMPSDQSMTRMPSSSSFGDELHEVEL
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atggctacgaatcctccatttaacgtgatggaggatcagacggatgaggatttctttgat
aagttagttgatgatgattttgggccccctaatttggattcgggccctaagttcacagag
ggaagtgattctgatgaggcgaaagcctttgccaatctcagtattgaggatacaaaaggt
ggattcgaggggaaggttgaaaatgatggtgcaggattggatggtgtgaaggcggaggag
agtaatgcgttggagtcagtgaattcgttgggcttgtctgatggggtgattgagtcaaat
aatgatgggattggatcggaggttgtgcctgagactactgtttgtcaaagcagtggatca
ttgaaatcaggggttaaggaagtggggtggggttcgttttacgcagattctgcggacaat
gggaatcatgggtttggttcgtcctctgatttttttaatgattttggaggcggttcagaa
gattttcctgcaaatatagttcaaagtgctagtaatgtagagaataggggtggtggaggt
ttggataattcggtcagttatgagcaatatcaagatggttcacaagtttatggaggatcg
gtgatggagagtgtgaatggactggacttgagtagcagtcagtattgggaaaacatgtat
cctggatggaagcaagatgcaaacactgggcagtggtatcaagtggatgcttttgatgct
acagcaagcatgcaagggagcgctgatggtgctttgggggttgaatgtgtggctgcttcg
gcctcaatctctgatgggaaaaaagaggttaattatttgcagcagacttcacagtctgtg
gtgggaactgtggctgagactagtacaaccgagagtgtgtctagctggaatcaggtttcc
caagggaataataatggttaccctgaacatatggtttttgacccacaatatcctggttgg
tattatgatacaatggtgggagaatggcgctcattggacagttacacaccatctgcacaa
tcatcaactgttcaaactaatgatcagcagaatcaaaatggattcgcatttagcaatcct
tattccccaaatagtagtagcatgaatgctgagtacggacaagctgacaagtatggctat
cagggctataataaccaaggcctacatggcagcgggggtgagtcttatggtagctacaat
caacagggtttgaatatgtggcaacctcagactgctgccaagacagatactatttcgaat
tttggtggaaaccagcaattagagaatttatatggttcaaatgtgtccatgaacaaccat
gtggatcagcagaatgcttttaattattcggggacagttccatcatatgacaaagcaagt
caaggttatgctgaggctaacggatttgttgggtcacaaagttttgtacacggcgggaac
ttcagtcagaagagtaatcaggaaactgtaaaacagaatgaacaagcaatcttttcaaac
gattactttagcagtcagaaacaagcaagtgttccccatcaatcatttcagagcaaccag
cagttttcttatgctcccaacactgggagatcatctgctgggcgtcctccacatgcactg
gttacttttggatttggtgggaagctcatagtaatgaaagatagcagttctcttaggaaa
acatccttcagcagccaggatcatgtaggaggctcaatctcagttatgaatttgatggag
attattttaggaagtagtgataatgcttcaagtgttggagggggcacttgcagttatttt
catgctctctgccaacagtcctttccaggtcctttggtgggcggaaatgttggaaataaa
gaattgaataagtggattgatgagagaattgcacactgtgaatcacttggtgtaaatcaa
agaaaaggcgaagtattgaggttgcttctcgctttactgaaaatagcttgtcagcattat
ggaaaacttcgatctccatttggaactgacaatttattgaaggagagcgatgctccagaa
tcagcagttgcaaaactctttgcatctgccaagaagaatagcacacacttcagtgagtat
ggtgcccttgaccactgcttgcagaatatgccctttgaaggacaaattagggcaactgct
tctgaggtacaacatcttctggtttctggtagaaaaaaagaggctttacaatgtgcacaa
gaaggccagctgtggggaccagcacttgttcttgcgtcacagcttggtgatcagtactat
gttgatactgtcaagctaatggcacttcgccagctggtagctggttctcctttgcgaaca
ttatgcttgctaatagcagggcaaccagctgaggtattttccacagattctaatgtacat
ggtggctttcctggtgatttgagtatccctcaacaacctgttcagtttggggcaaacaga
atgcttgatgactgggaagagaatttggctgtaataactgcaaacagaacaaaagatgat
gagctcgtgctcatgcatcttggagattgcctatggaaggatagaagtgagattactgct
gcacacatctgctatttaatagcggaagcaaactttgagtcatattcagacactgcaagg
ctatgcctaattggagcagatcactggaagcatccccgaacatatgctaatccagaggct
attcagagaactgagttgtatgaatactcaaaggtgcttggtaactcccagtttatcctg
ctaccgtttcagccgtataagctcatctatgcatacatgctggctgaagtgggcaaagtc
tctgattcacttaagtattgtcaggctgttttaaaatccctaaaaactggtcgagctcct
gaagtagaaacatggaagcttttagtattatcccttgaggaaaggattagagcccatcag
cagggtggattcaccacaaatttggctccaggaaagatagttggcaagttgctcaacttt
tttgatagtactgcacatcgtgttgttgggggcctgccaccacccgcaccatcagcatca
caaggaagtgtgccagatagccatcaccaactggtggctcccagagtatcaggtagtcag
tcaacaatgaccatgtcatcgctaatatcttctgcttcaacagagcccataagtgaatgg
gcagctgatggcaataaaatgacaatgcataatagaagtgtttcagagccagactttggt
agaagtccaatacagtatcaggctgattcatctacacaaggaactccttccagcacacaa
agtaaggcatcaggttcagtggggtcatctcggtttggtcgttttggttttggatcacag
cttttgcagaaaactgtagggctagtcttaaggcctcgctcggataaacaggctaaattg
ggtgaaaagaacaaattttattatgacgaaaagctcaagagatgggtggaggaaggtgtt
gaacccacagctgaagcagcagccttggcaccccctccaacaactctaggcttccagaat
ggaggctcggactacaacttgaaatccgctttgaagaatgaagtgtctccgactgatggg
aactcaacgtttaagagtcccacttcaacagaccatccttcagggattccgcctattcca
gccagttcaaatcaattctcggctcgtgggcgcatgggtgtcagggcaaggtatgttgac
acctttaaccaaggtggtggaaaaccagcaaatctgttccagtccccgtctgttccatct
gtcaaacctgctgttgcttcaaatgcgaagttttttgttcccgcacccgcacccgcaccc
gcaccatcactagaatattctatggaagctatagcagagaacatacaagaagacagtgca
accactgaaaaaccttctacattcaatatgaaggagaatgattatccacagccttccacg
tcttcatcagcaatggctatgcaaagatttccaagcatggataacattacgagaaagggg
ggtatgataaatgggaaagacttggtttcatccaactcacgacgaacagcgtcatggagt
gggagcttcagtgattcatttagtcctcctaaggtgatggaatccaaatctccaggggag
gctttgggcatgaccccttcatcatttatgcctagtgaccaatccatgacgcgaatgcca
agtagcagtagttttggagatgaacttcatgaggtggaactttaa
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