Populus trichocarpa (black cottonwood): 18094702
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Entry
18094702 CDS
T01077
Name
(RefSeq) nuclear pore complex protein NUP107
KO
K14301
nuclear pore complex protein Nup107
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
18094702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18094702
03036 Chromosome and associated proteins [BR:
pop03036
]
18094702
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
18094702
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
18094702
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup84_Nup100
Motif
Other DBs
NCBI-GeneID:
18094702
NCBI-ProteinID:
XP_024444211
LinkDB
All DBs
Position
1:complement(14109054..14122414)
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AA seq
1092 aa
AA seq
DB search
MEDVEMDVSNSYFDPEDLTIREQFRRYGKRHSISSVSPHQDGPVSKFSESRLLYDGNNIH
SPTNAALILENIKQEVDSIETYHFEGATTPARNQSAIKRRSSVDSRGGFSEADLGIDSGA
RFGSQSLKACKIEDETLTDSGETTFGLFASLFDSAIQGLMPIRDLILRFEKSCRDVSESI
RYGPNIWHRVVEDKLMRQKAQFLLDEAATWSLLWYLYGKVTEEPPEELIVSPSTSHLEAC
QFVVNDHTAQLCLRILQWLEGLASKALDLESKVQGSHVGTYLPKSGIWHQTQRFLQKGAS
NTNTVQHLDFDAPTREHAHQLLDDKKQDESLLEDIWTLLRAGRLENALDLCRSAGQPWRA
ATLCPFGGLDLVPSVEALVKNGKNRMLQAIELESGIGHQWHLWKWASYCASEKIAEQNGG
KYEVAVYAAQCSNLKRILPICTNWESACWAMSKSWLDARVDLELARSQPGRTVQLKSYGD
VGDGSPGQIDGAAHAAGPENWPQQVLNQQPRNLSALLQKLHSGELVNEAVSRGCKEQHRQ
IEMDLMLGNIPHLLDMIWSWIAPSEDDQNIFRPHGDSQMIRFGAHLVLVLRYLHAEEMQD
SFREKLMTVGDLILHMYVMFLFSKQHEELVGIYASQLARHRCIDLFVHMMELRLNSSVHV
KYKIFLSAMEYLPFSSEDDSKGSFEEIIERILLRSREVKGGKYDKSSDVAEQHRLQSLEK
ATSIQWLCFTPPSTITNVKEVSVKLLLRALTHSNILFREFALISMWRVPAMPIGAHALLS
LLAEPLKQLSELPNSLEDYVSENLKEFQDWSEYYSSDATYRNWLKIEIENGEVPPLELSV
EDKQRATAAAKETLNSSMSLLLRKGNPWLASPDDETFESTMLVFLELHATAMLCLPSGEC
MHPDATICTALMSALYSSVCEEVVLRRQLMVNVTISPRDNYCIEIVLRCLAVEGDGLGSH
QVSDGGVLGTVMAAGFKGELARFQAGVTMEISRLDAWYTSADGTLEGPATYIVRGLCRRC
CLPEIILRCMQVSVSLMESGNPPECHDELMELVACPDTGFLQLFSQQQLQEFLLFEREYE
ICNMELQEELAS
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgttgaaatggatgtgtccaacagctacttcgaccccgaagatcttaccata
agagaacagtttcgccgttacgggaaaaggcactcgatatcaagcgtttcaccccatcaa
gatggtcccgtttccaagttcagtgagtccaggctgttgtatgatgggaataatattcac
agccccaccaatgctgcacttattctagaaaacatcaagcaagaggttgacagcattgag
acctatcattttgaaggtgctactacgcctgcgaggaatcaatctgcaatcaaaaggaga
tcgtctgttgatagccgtggtggattttcagaggctgatcttggtattgattcaggtgct
cgatttggaagccaatcacttaaagcttgcaagattgaggatgagacattgacggatagt
ggagagactacttttggtttatttgcgtctctttttgattctgctattcaagggttgatg
ccaattcgtgatctcattttaagatttgaaaaatcatgccgggatgtttcagagtccatt
aggtatgggcccaatatatggcatcgggttgtagaggacaaattgatgagacagaaggct
cagttcttgcttgacgaggctgctacctggtctctcctttggtacctctatgggaaagtt
acagaggagccccctgaagagctgattgtgtcaccatcaacatcacatttggaggcttgc
cagtttgtcgtgaatgaccatacagcacagttgtgcctccgaatccttcaatggctggaa
gggttagcctctaaagcccttgatttggaaagcaaggtgcaaggatctcatgttggtacc
tatcttccaaagtcaggaatttggcaccagacacaacggtttctacagaaaggtgcctcc
aatacaaatactgttcaacacttggattttgatgctccaacccgagaacatgcgcatcag
ttactggatgacaaaaaacaagatgaatctcttctggaggatatctggaccctattgagg
gctggaagactggaaaacgcactagacctttgccgctcagctggacagccatggagagct
gcaactttatgtccatttggaggattggaccttgttccttctgttgaagccctggtgaaa
aatgggaagaacagaatgctgcaagccattgaattagaaagtggcattggtcaccaatgg
catttatggaaatgggcttcctattgtgcgtcagagaaaattgctgagcaaaatggtggg
aaatatgaagtagctgtatatgcagcacaatgcagcaacttgaagcggatacttccaatc
tgtacaaactgggagtcagcatgctgggcaatgtcaaagtcctggcttgatgctcgggtg
gacttagaactagctcgctcacaaccaggaagaacggtgcagcttaaaagctatggagat
gttggtgatggaagtcctggacaaattgatggtgctgctcatgcagctggaccagaaaat
tggccacaacaagttctgaaccagcaaccacggaacctttcagcacttcttcagaaactc
cactcaggtgaactggttaatgaagcggttagtcgaggatgcaaggagcagcaccggcaa
attgagatggatttaatgttagggaatataccacatcttctagacatgatctggtcatgg
atagcaccttcggaggatgatcaaaatatcttcaggccacatggcgattctcagatgatt
cgttttggtgctcacctagtgcttgtgctgaggtatttacatgctgaggaaatgcaggat
tcttttagagagaagctcatgactgttggtgatctcattcttcatatgtatgtgatgttt
ctgttctcaaagcaacatgaggagttggttgggatctacgcttctcagcttgcacgtcac
cgttgcattgacctctttgtgcatatgatggagctgaggctaaatagcagtgtgcatgtc
aaatataaaattttcctttctgctatggaatatttgccattttcttctgaggatgattca
aaaggaagttttgaagaaattattgagaggattctgttaagatctcgggaagttaaaggt
ggaaaatatgacaagtcatcagatgttgcagagcagcaccggttgcagagtcttgaaaaa
gctacatcaatccaatggctctgctttacaccaccctccacaattaccaatgtgaaagaa
gtcagcgtgaaacttcttctgcgggcattgacacacagcaatatattgttcagggaattt
gctctgatttctatgtggagagtgccagcaatgccaataggtgcacatgcattgctaagt
ttacttgctgagcctttgaagcagctttcagaactaccaaatagtcttgaggattatgtt
tctgagaatctgaaagagtttcaagattggagtgagtactactcctctgatgcaacttat
cgcaactggctcaaaattgagattgagaatggtgaggttcctccccttgaactctcagtg
gaggataaacaaagagccacagcagcagccaaagagacattgaattcttctatgtcattg
ttattaagaaaaggaaatccttggttggcttctcctgatgatgagacatttgaatcaaca
atgcttgtattccttgaattgcatgccactgctatgctttgtctgccatctggtgaatgt
atgcatccagacgctaccatttgcactgcattaatgagtgccctttacagttcagtgtgt
gaggaagttgtattacgccgccaattaatggtgaatgttaccatttcacctagggacaat
tattgcatcgagattgttcttcgctgtttggcagtagagggtgatggacttggatcacac
caagttagtgatggtggtgttctgggtactgtcatggcagctggcttcaaaggtgagctt
gctcggttccaagctggggtcacaatggagatatccagattagatgcttggtatacaagt
gcagatggtactttggaaggcccagcaacatatattgtgcggggcctttgtcgtaggtgc
tgtcttccagaaatcattcttcgatgtatgcaggtttctgtttcactaatggagtcgggt
aatccgccggaatgccacgatgagttgatggaactcgttgcttgcccagatactgggttt
cttcaattgtttagtcagcaacaattgcaggagtttctattatttgagagggaatatgaa
atatgcaatatggagcttcaggaggaacttgcatcttga
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