KEGG   Populus trichocarpa (black cottonwood): 18094708
Entry
18094708          CDS       T01077                                 
Name
(RefSeq) sm-like protein LSM1B isoform X1
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    18094708
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    18094708
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     18094708
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     18094708
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 18094708
NCBI-ProteinID: XP_006369123
UniProt: B9N7F0
LinkDB
Position
1:complement(14183195..14186757)
AA seq 128 aa
MSWAGPEDIYLSTSLANYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEGACERVIVGDL
YCDIHLGLYVIRGENVVLIGELDLEREELPPHMTRVSEAEIRRAQKAEREATDLKGTMRK
RMEFLDLD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcttgggcaggcccagaagatatttacctctctacttctcttgccaactatcttgat
aagaagcttcttgtgctcctacgagatggccgaaagctcatgggattacttcgttctttt
gatcaatttgccaatgctgtccttgaaggtgcatgcgaaagagttattgttggtgacctt
tattgcgacatccacttgggtctatatgtgattcgtggggagaatgttgtcttaattgga
gagctggatttggagagggaggagcttccaccacatatgactcgtgtttcagaagcagag
attagaagggcgcagaaagcagaaagggaggcaacagatctaaaaggtacaatgaggaaa
agaatggagttccttgatttggactag

DBGET integrated database retrieval system