Populus trichocarpa (black cottonwood): 18094708
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Entry
18094708 CDS
T01077
Name
(RefSeq) sm-like protein LSM1B isoform X1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18094708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18094708
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18094708
mRNA degradation factors
5'-3' decay
Lsm complex
18094708
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
18094708
NCBI-ProteinID:
XP_006369123
UniProt:
B9N7F0
LinkDB
All DBs
Position
1:complement(14183195..14186757)
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AA seq
128 aa
AA seq
DB search
MSWAGPEDIYLSTSLANYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEGACERVIVGDL
YCDIHLGLYVIRGENVVLIGELDLEREELPPHMTRVSEAEIRRAQKAEREATDLKGTMRK
RMEFLDLD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcaggcccagaagatatttacctctctacttctcttgccaactatcttgat
aagaagcttcttgtgctcctacgagatggccgaaagctcatgggattacttcgttctttt
gatcaatttgccaatgctgtccttgaaggtgcatgcgaaagagttattgttggtgacctt
tattgcgacatccacttgggtctatatgtgattcgtggggagaatgttgtcttaattgga
gagctggatttggagagggaggagcttccaccacatatgactcgtgtttcagaagcagag
attagaagggcgcagaaagcagaaagggaggcaacagatctaaaaggtacaatgaggaaa
agaatggagttccttgatttggactag
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