Populus trichocarpa (black cottonwood): 18094897
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Entry
18094897 CDS
T01077
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X5
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
18094897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
18094897
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
18094897
SWR1 complex
18094897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Myb_DNA-bind_6
HDA2-3
ERCC3_RAD25_C
Myb_DNA-binding
ETC_C1_NDUFA5
Motif
Other DBs
NCBI-GeneID:
18094897
NCBI-ProteinID:
XP_002298195
UniProt:
A0A2K2C110
LinkDB
All DBs
Position
1:complement(21196910..21211856)
Genome browser
AA seq
1740 aa
AA seq
DB search
MVFKFFPLHCYLPGISSISSPYGITGFCFDRVGLTITRNISREEKINKKWFRFEEDGDFD
LAAEEEKDDETTLLEEEELAKADSKNPIDEISLLQKESEIPLEELLARYTKEPNNEVSED
ESEYASLLSDNVSNSPGHEDELKQLDNSMDGIVECGNHPLVEEQEKGNEKISEDGRESEN
RIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYPLREYQHIGLDWLVTMYEKRLNGILA
DEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFFKWCPAFKILTYFGSA
KERKCKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTL
LNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFSNPITGMVEGQERVN
KEVVDRLHNVLRPFILRRLKRDVEKQLPMKHEHVIYCRLSRRQRNLYEDFIASSETQATL
ATANFFGMISIIMQLRKVCNHPDLFEGRPIISSFDMAGIDMQLSSSVCSMLSPGPLSSVD
LCALGLIFTHLDFSMASWEYDEVKSIATPSRLIKERSNLDNIEEVGPGSKHWKKLPGKNI
FEEIRKSLLEERLREVKQRAASIAWWNSLRCQKKPIYSTTLRELLTVKHPIYDVHRHKTE
RLSYLYSSKLGDVILSPIERFQKMTDLVESFMFAIPAARTPVPVFWCSQIRTPVFLHSTY
EEKCSEMLLPLLSPIRPAIVRRQLYFPDRRLIQFDCGKLQELAILLRKLKSEGHRVLIFT
QMTKMLDILEVFMNLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFIFILSTRSGGVGIN
LVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRAL
DDLVIQSGGYNTEFFKKLNPMELFSGHKTLQIKNMQREKNHNNGNEVSLSNADVDAALKY
AEDEADYMALKKVEQEEAVDNQEFTEEAIGRLEDDEFVNDDDMKADEPTDHEMTTYSKDG
AVNLKENGCIEERAVTLTGNEDVDMLADVKQMAAAAAAAGQAISSFENQLRPIDRYAVRF
LELWDPIIDKAALESQVGFEETEWELDRIEKYKEEMEAEIDDDEEPLVYERWDADFATEA
YRQEVEALTQHQLLEEQEAEANEKEGADDGHLDAMVYKMPRNPKLKSKKKPKKAKFKSLK
KESLTSELKHVKEEVSMETLSVDDDDDGTYSDTMSPCSSMWRKRKKAESAICIDKTRSKK
TKKFKKGPETCTFSVDSDLSGKQHDRFTELKPYEVVVSDIEQKPASRSKMGGKISISTMP
VKRVLMIKPEKLKKGNVWLKDCVPPPALWMPQEDAVLCAVVHEYGPHWSLVSEILYGMTA
GGFYRGRYRHPVHCCERFRELIHRYVLFSPENPINNEKMSNMVPGKALLKVTEDNIRMLL
NVVAEQPDHELLLQKHFTALLSSVWRVKSRVENQQNMPSSRNALYNSGRVFNSSVNPLPW
NSLRESAKRMKFTNLGQSTKLLAAALHDASSRRPGDRVSNSNVNEEAPAVGEKLEITLEF
QKEENDYLIPFPPVISLSIPGSAPWMSVNKDRAAAHHLRASTSIAENRFRDAARASSSVL
PANDLKLWLASKTQSLGKHKLTVSESTKPPRSKTRKTLLEQNEGHAEPVMQPLSDRDPNL
RFDLPPEVIQDDKDGFSISFMEKELSVETKISEAVPHIYVPDLILGLDDYSLLPEYTDIG
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atggttttcaaatttttcccccttcactgctatctgccaggaatctcatctatttcttct
ccctatggaattacgggtttctgttttgatcgagtgggactaactattactagaaatatc
tcaagagaagaaaagataaacaagaaatggtttagatttgaggaagatggtgattttgat
cttgctgcagaagaagaaaaggatgacgagacaaccttgttggaagaggaagagctggca
aaagcagattcaaagaatcccatagatgagatctcattgctgcaaaaggagagtgaaatc
cctttggaagaattgcttgcaaggtataccaaggagcctaacaatgaagtttcagaggat
gaatctgaatatgcatctttattatcagacaatgtgtcaaattccccaggccatgaagat
gaactgaagcagctggataactcaatggatggaattgttgaatgtggaaaccatcctctt
gtagaagaacaagaaaagggaaatgaaaaaatttcagaagatggaagggagagtgagaat
aggattgctgatgctgctgctgctgcaagatctgcacaaccaacaggcaatacattctca
acaactaaagtgcgcacgaagttcccttttcttcttaagtaccctcttcgtgaatatcaa
catataggccttgattggcttgttacaatgtatgagaaaagattaaatgggattctagct
gatgaaatggggcttggaaagacaatcatgactattgctttgcttgcacacctggcatgt
gaaaagggaatatggggtcctcatctgatcgtggttcccacaagtgtcatgcttaactgg
gaaacagagttttttaaatggtgtcctgccttcaagattttaacatattttggcagtgca
aaagagcgtaaatgcaagaggcaaggttggctgaaaccgaactccttccatgtatgcata
acaacttacagactggttatacaggattccaaagtcttcaaaaggaagaaatggaagtat
ttgatattggatgaagctcatctgattaaaaattggaagtctcagagatggcaaactctt
ttaaactttaattcaaaacgacgaatcttattaactggtacacctctgcagaatgatctc
atggaactctggtcactgatgcatttcttgatgccccacatctttcaatctcaccaggaa
ttcaaggactggtttagcaatccaataactgggatggtggagggacaagaaagagtgaac
aaagaagttgttgatcgtttgcataatgttctccgtccattcatcctccgtcgattgaaa
agggatgtggagaagcagctgcccatgaaacatgagcatgtcatctattgtagactttca
aggaggcagcgtaacttgtacgaggatttcattgctagctcagagacacaagctaccctt
gccactgccaacttttttgggatgatcagtatcataatgcaacttcgtaaagtttgtaac
catcctgacttatttgagggtcgtccaattattagttcttttgatatggctggtatagac
atgcaattaagtagttctgtttgttcaatgctttcacctgggccattgtcatcagtagat
ctttgtgctttggggcttatatttactcatcttgattttagcatggcctcttgggagtac
gatgaagtaaagtctattgcaactccatcaagattaattaaggagcgttccaacctggat
aacatagaagaagttggaccgggatctaaacattggaagaagttgcctggaaaaaatatt
tttgaagagattagaaagtcattattggaggagagattaagagaagtgaagcaacgggca
gcatctattgcatggtggaattccttgaggtgtcagaaaaaacccatatactcaacaacc
ctacgagaacttctcacagtgaagcatcccatctatgatgtccatcgccataaaactgag
cgactctcttacttgtactcttctaagctgggtgatgttattctttcaccaattgaacgg
ttccagaagatgactgatcttgtggaatcatttatgtttgcaattccagcagcacgtacc
ccagtacctgtcttctggtgtagtcagattagaactccagtgtttcttcattcaacttat
gaggagaaatgctctgaaatgttgttacctcttctttcacctatcagacctgcaattgtt
cggagacaactttattttccagacaggcgtctaatacagtttgactgtggtaaattgcag
gagcttgcaattttgctcaggaagttgaagtcagaaggacaccgggtattaatattcaca
cagatgactaagatgcttgatattttggaggttttcatgaatttgtatggctacacttac
atgcgcttagatggatccactcaaccagaggagagacaaacattaatgcagcgtttcaac
acaaatcccaaaatctttatcttcattttatcaacccgtagtggaggtgttggcatcaat
cttgtaggggcagatactgtaatcttctatgatagtgactggaatcctgctatggatcaa
caggcccaagaccgctgccatcggataggacagacacgtgaagtacatatctacaggtta
atcagtgagagcaccattgaagaaaacattttaaagaaagccaatcagaagcgtgctctt
gatgatctagtaatacagagtggagggtacaatacggaatttttcaagaagctcaatcct
atggaattattctcagggcataaaacacttcagattaagaatatgcagagggagaaaaac
cataacaatggaaacgaggtgtctttgtctaatgcagatgtggatgctgctctgaaatat
gcagaagatgaagcagattacatggcattgaagaaagtcgaacaggaagaggctgtagac
aaccaagagtttactgaagaggccattgggagattggaagatgatgaatttgtgaatgat
gatgatatgaaggctgatgagcctacagaccatgagatgacaacttatagtaaagatggt
gcagtgaatttaaaagagaatggttgcattgaagagagagctgtaactcttactggcaat
gaagatgttgatatgttggctgatgtcaaacagatggcggcggcggcggctgctgctgga
caagctatctcatcctttgagaatcagctacgtccaattgacagatatgcggttcggttt
ctggaattgtgggatccaattatagacaaagcagccttggaatctcaagttgggtttgag
gagaccgaatgggagcttgatcgtattgagaagtacaaggaggaaatggaagctgagatt
gatgatgatgaggaaccattggtttatgaaagatgggatgctgattttgcgactgaggca
taccgacaagaagttgaggcattaactcaacatcagctgttggaagaacaggaagctgaa
gctaatgagaaggaaggtgcagatgatggacatttagatgctatggtgtataaaatgcca
cgtaatcctaaattgaagtctaagaagaaaccaaagaaagccaagttcaaatctctgaag
aaagaatctttgacttctgaattgaaacacgtgaaagaggaggtatcaatggaaactttg
tctgtagatgatgatgatgatggtacatattcggatacgatgtctccttgttccagtatg
tggagaaagcgtaagaaagcagaatcagcaatttgtattgacaaaacgaggtcgaagaag
actaagaaattcaaaaagggtccagaaacgtgcacttttagtgtagattcagacctgtct
ggaaagcagcatgacagatttacggaactaaaaccatatgaggttgtggtttccgatatt
gagcagaagccagctagcaggagcaaaatgggagggaaaatatccatcagtaccatgcca
gtgaaacgggttttgatgataaagccagagaagttgaagaaggggaatgtttggttgaaa
gattgtgttccaccacctgctttatggatgccacaggaggatgcagtattatgtgctgtt
gtacatgaatatggtccacattggagcttggtcagtgaaattctgtatgggatgactgct
ggtgggttttatcggggaagataccgccatccagttcattgttgtgagagatttagggag
ctaatccacagatatgttttattttctccggaaaatcctattaataatgaaaagatgagc
aacatggtccctgggaaggcccttctgaaagtaaccgaggataacatacggatgttgtta
aatgttgttgctgagcagccagaccatgagttacttctccagaagcacttcacagcactg
ctttcttctgtgtggagggtgaaatctcgtgttgaaaatcaacaaaacatgccatcatct
cgaaatgccctttataacagtggaagggttttcaattcttctgttaatccgttaccttgg
aactccttgagggaatcggcaaaaagaatgaaattcactaatttgggacagagtaccaag
ttgctggcagctgcactccatgatgccagcagtagaaggccaggtgatagagtttccaat
tccaatgtgaatgaagaagctcctgctgtaggcgagaagctggaaataacattggaattc
caaaaggaggaaaatgattatttgattccattcccacctgtaataagtttgtcaatacct
ggctcagcaccatggatgtctgtaaataaggatagagcggcggctcaccatctcagggca
tccacaagcatagctgaaaatcgattcagggatgcagcaagagcttcttcatctgtgtta
ccagcaaatgatttgaagttgtggctggcttcaaagactcagtccttgggaaagcacaag
ctaactgtctctgagtcaaccaagcctcctaggtcaaagacgaggaaaactttgctggag
caaaatgaaggacatgccgagccagtaatgcaaccactgtcagatagggatcccaattta
aggtttgacctgccaccagaagtcattcaggatgataaggatgggttttctatttcattc
atggaaaaagaactttcagtggaaacgaagatctccgaagctgtcccgcatatctatgtt
cctgatttgatattgggtcttgatgattattctttgttgccggaatacactgacattgga
tag
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integrated database retrieval system
