Populus trichocarpa (black cottonwood): 18095012
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Entry
18095012 CDS
T01077
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18095012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18095012
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
18095012
U7-dependent histone pre-mRNA processing factors
18095012
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Cas_Cas4
Motif
Other DBs
NCBI-GeneID:
18095012
NCBI-ProteinID:
XP_006369487
UniProt:
U5GUE6
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Position
1:complement(25094097..25098943)
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AA seq
740 aa
AA seq
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MGTSVQVTPLSGVYNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASKIDAVLL
SYGDMLHLGALPFAMKQFGLNAPVFSTEPVYRLGLLTMYDQSFSRKAVSEFDLFSLDDID
SAFQNFTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVVYAVDFNHRKE
RHLNGTVLESFYRPAVLITDAYNALNSQPSRQQRDKQFLETILKTLEGGGNVLLPVDSAG
RVLELLLILEQFWGQRFLNYPIFFLSYVSSSTIDYIKSFLEWMSDSIAKSFETSRDNAFL
MKHVTLLISKDELDNASTGPKVVLASVASLEAGFSHDIFAEWAADVKNLVLFTERGQFGT
LARMLQADPPPKAVKMTMSRRVPLVGDELIVYEEEQKRLKREEELKASLIKEEESKVSHG
PDNNLSDPMVIDSGNTHSPLDVVGSRGSGHRDILIDGFVPPSTSVAPMFPFYENSLEWDE
FGEVINPDDYVVQDEDMDQAAMHVGADIDGKLDEGSASLILDTKPSKVVSNELTVQVKCS
LIYMDYEGRSDGRSIKSILTHVAPLKLVMVHGSAEATEHLKQHFLNIKNVQVYAPQIEET
IDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEVAWVDAEVGKTENGMLSLLPISSPAPPHK
SVLVGDLKMADFKQFLASKGVQVEFAGGALRCGEYVTLRKVGNPSQKGGASGTQQIIIEG
PLCEDYYKIREYLYSQFYLL
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgggaacatcagtgcaagtgacaccactcagcggtgtatacaatgaaaatccactctct
tacttagtctccatcgacggtttcaatttcttaatcgattgcggttggaacgatcacttc
gacccctctcttcttcaacctctctctaaagttgcttccaaaatcgatgcagtcctgtta
tcttacggtgacatgcttcacttaggcgcgttgccttttgctatgaaacaattcggactc
aacgctcctgttttttccactgaacctgtttatcgattaggtcttctcaccatgtacgac
cagtctttctctcgcaaggcggtttcggagtttgatttgtttagtttagatgatattgat
tctgctttccagaattttactaggcttacatactctcaaaatcatcatctttccgggaag
ggagaggggattgttattgcgccgcatgtggcaggacatttactgggaggaactgtgtgg
aagataacgaaagatggagaggatgttgtttatgctgttgatttcaatcatcgaaaagaa
aggcatttgaatggaactgttttggagtcgttctaccggcctgctgttctgataactgat
gcttataatgctttaaatagtcagccttctagacagcaaagagacaaacaattccttgag
actattttaaagactctagaaggtggtggaaatgtattactacctgttgattctgctggc
cgagttttggaacttctactaatattggaacagttctggggacaacggtttttgaactat
cccatattctttctctcgtatgtttcatcaagcaccattgattacatcaaaagtttcctg
gagtggatgagtgattcaattgcaaagtcttttgaaacttcacgtgataatgcttttctt
atgaaacatgtgacacttctgataagcaaggacgaattagataatgcttcaactggtcca
aaggttgttctagcatctgtggctagtttggaagcaggtttttctcatgatatatttgct
gaatgggcggctgatgtcaagaatcttgttctctttacagaaaggggccagtttggcacg
ctagctcgcatgcttcaggcagatccacctccaaaagctgttaaaatgaccatgtcaagg
agggttcccctggttggggatgagttaattgtttatgaagaagagcaaaagcggttgaaa
agggaagaggaactcaaagctagtctgatcaaagaggaggaatcaaaagtgtctcatggg
cctgacaacaatttgagtgatccaatggtcattgattctggcaacacacattctccactg
gatgtggttggttcacgtgggagtggacaccgggacatcttaattgatggatttgttcct
ccatccaccagtgttgctccaatgtttccattctatgagaatagcttagagtgggatgaa
tttggtgaagtcataaatcctgatgattatgtagttcaggatgaagacatggaccaagca
gctatgcatgttggtgcggatattgatggaaaacttgatgaagggtctgctagtttgata
cttgatacaaagccatcaaaagttgtctcgaatgaactgacagtgcaagtgaagtgttca
ttgatttacatggactatgaagggcgttctgatggacgctcaattaaatccattcttacc
catgtggcacccttgaagcttgttatggtgcatggatcagctgaggccacagaacacttg
aagcagcatttcctaaatataaagaatgtccaggtttatgctccccaaattgaagagaca
attgatgttacctctgatttgtgtgcatacaaggtgcaactttcagagaagctgatgagt
aatgtgctttttaaaaagttgggagactatgaagtagcgtgggttgatgctgaggtaggg
aagacagagaatggtatgctgtcattactgcccatctcatctccagcccctccacataaa
tctgttcttgttggtgacttgaaaatggcggatttcaaacagtttctagccagcaagggc
gttcaggtagaatttgctggcggggcattgcgatgtggagagtatgtgacactgcgtaaa
gttgggaatccaagccaaaagggtggcgcttctggcactcaacaaattatcattgaaggt
cctttatgtgaagattattataagatacgtgagtatctatattcacagttttatttgctt
taa
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