Populus trichocarpa (black cottonwood): 18095311
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Entry
18095311 CDS
T01077
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18095311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18095311
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18095311
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
18095311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
18095311
NCBI-ProteinID:
XP_006369908
UniProt:
U5GX78
LinkDB
All DBs
Position
1:36162213..36167429
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AA seq
664 aa
AA seq
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MSALLNSGLNGSASNLPDNTARSFATSFSGQSGAAASPVFHHSGGTIQGLHNIHGSFNVP
NMPGTFASRNSTINNIPSGGVQQPTGSLSSGRFASNNLPVGLSQLSHGSSHGHSGVTNRG
GLSVVGNPGYGSNTNGIGGSIPGILPTSAGIGNRNAVPGLGVSQILGNTGPRITSSGGNM
VGGGNIGRSLSSGGGLSVPGLASRLNLTANSGSGSLGMQGQNRLMTGVLPQGNPQVIPML
GNSYPTAIGPLSQSHVQGVNNLSSMGMLNDVISNDSSPFDINNDFPQLTSRPSSAGGPQG
QLGSLRKPGLGVSPIVQQSQEFSIQNEDFPALPGFKGGNADYTMDLHQKEQLHDNTLSMM
QSQHFSIGRSAGFNLGEAYSSYRPQQQQQHAPAVSSGVSFASVNNQDLHGSELFPSSHSA
YHPQTSGPPGIGLRPLNSPNTVSGVGSYDQLIQQYQHQNQPQFRLQQMSTVNQPFRDQGI
KSMQTAQSAPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSAESLHKTFGSPWS
DEPAKGDPEFNVPKCYYAKPPPPLDHNYFSKLWTETLLYAFYSMPKDEAQLHAANILYER
GWLYHKEQRRWLKRVPNTEPLVKTSAYERGSYHCFEPNTFEITLKENFVLHYEMVEKRPG
LPQH
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgttacttaattctggtctaaatggatcagcttcaaatcttccggacaacacg
gcgcgatcttttgctacatccttctctggccagtccggtgcggcagcctctcctgttttt
catcacagtggtggaactattcaagggctgcataatattcatgggagctttaatgtaccc
aacatgcctggaacttttgcttcaagaaactctacaatcaataacattccttcaggtggg
gttcaacaacctactggaagcctctccagtggacggtttgcgtccaataatcttccagtt
ggtctctctcagctgtctcatggcagttcccatggacattctggggttacaaatagagga
ggtttaagtgttgtaggaaatccaggatatggtagcaacaccaatggaattggtggttct
atacctggtattctcccaacctctgctggaataggtaaccggaatgctgttcctggattg
ggggtttcccaaattttgggcaatacaggtcctaggattacgagttctggaggaaacatg
gttggtggtgggaacattgggagaagcttaagctcgggtggaggactatctgtccctggt
cttgcatctcgtttgaatttaactgcaaatagcggatctggcagcttaggcatgcaagga
caaaatagattaatgactggtgtgcttccacaaggaaatccacaggtgattcctatgtta
ggaaactcctaccccactgccattggtcctctttcccaaagccatgttcaaggtgtgaac
aatctcagctctatgggaatgttgaatgatgtgatctccaatgacagttcccctttcgac
attaacaatgatttccctcagttgacaagtcgtcctagttctgctggagggcctcaaggt
caattgggttcactacgaaaacctggtcttggagttagtcccattgttcaacaaagccaa
gagttcagcattcagaatgaagattttccagctttaccaggatttaaaggtggtaatgct
gattacactatggatttgcatcagaaagaacaattgcacgacaataccttgtcaatgatg
caatctcagcacttctctatagggagatctgctgggttcaacttaggagaggcttattca
tcctatcgtcctcagcagcaacagcaacatgccccagctgtcagtagtggcgtctctttt
gcatctgtaaacaatcaagatcttcatggttcagaactatttccgtcttcacattcagcc
tatcacccacagaccagtggaccaccaggaattgggctgagacctttaaattctccgaat
acggtatctggtgttggatcatatgaccagctcatccagcagtatcaacaccagaaccag
ccccagtttcgactacaacaaatgtcgactgtcaatcaaccatttagagatcagggcata
aagtccatgcagacagcacaatctgcacctgatccatttgggttacttggcttgttaagt
gttataaggatgagtgatcctgatctgacctccctggcacttggaattgatttaacaact
cttggattgaatttgaattcagctgagagtcttcacaagacttttggctccccatggtct
gacgagccagcaaagggtgatccagagttcaatgttccaaagtgttattatgctaagcca
ccacctccactggatcataattacttttcaaagctctggacagaaacgttgctctatgcc
ttttacagcatgccaaaagatgaagctcaattacatgccgcaaacatactttatgaaaga
ggctggttataccacaaggagcagcggcgttggttaaaaagagtccccaacacagagcca
cttgttaaaacgagcgcatatgagagagggtcttaccattgttttgaaccgaacacattt
gagataacactcaaggaaaatttcgttctccattatgagatggtggaaaagagaccgggt
ctgcctcaacattaa
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