Populus trichocarpa (black cottonwood): 18095418
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Entry
18095418 CDS
T01077
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
KO
K14829
pre-rRNA-processing protein IPI3
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pop03009
]
18095418
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
18095418
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
EIF3I
NBCH_WD40
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_Vps41
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_IP5PC_F
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_HPS5
PQQ
WDR90_beta-prop_4th
Beta-prop_DCAF4
BCAS3_WD40
Beta-prop_SPT8
KNTC1_N
Beta-prop_NWD2_C
Beta-prop_NOL10_N
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
18095418
NCBI-ProteinID:
XP_006370071
UniProt:
U5GSX8
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Position
1:40363856..40365266
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AA seq
412 aa
AA seq
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MSSSREIVLTSSPDGPITAYDIFSGTTLARFSGSRSPRHGLVLAGKAYIAASHISSATAS
GSIHLYNWWSSTAFHHLPVPEPVAPLAATPDGSFLFAGGVSGNIYALSIPSGNILKSFPA
HTKPVSCLTISNDGSLLISGGDDGTILVVPIFQLVEQTTDGNCKDLMLHSFVAHDGPVTA
ITCIGFCHYTVISCSTDCTCKLWSLLDGTNLRRITFPCAISRIALDPTGTEFYAAGADGL
IYKGFLKVGSRKQVSPMLELAILADKHGGAIISVVMMNAGKNLVSAAEDGRVYLWEVERG
QVIMVLGNNMESISDLVVASGICDARRQGVRVGENMNKSVGGGIVLSGKEFTRSVKDTVE
IEDVLSVAAKDRSKTIDMLESAIGVYERLLELILKEAKGGTSRNSHEDNGDM
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttctcgtgagattgtcctcactagctctcctgatggccccattactgcttat
gacatcttctcaggcaccaccctagctcgcttctctggcagcaggtcaccacgccatggc
cttgtccttgcagggaaggcttatattgccgcctctcatatctcctcagccactgcctca
ggctcaattcacctgtacaattggtggtcctcgacagcttttcaccatctgcctgtccct
gaacctgtggctccactcgctgccactcctgatgggtcatttttatttgctggtggcgtt
tctgggaatatctatgctctttccatcccttcaggtaacattctgaaatcatttcctgcc
cacactaaacctgtatcctgcctcacaatcagcaatgacgggtcactcctaatttctggt
ggtgatgatggtaccatacttgttgttccaatctttcaacttgttgagcaaacaacggat
gggaattgtaaagacttgatgttgcatagctttgttgcacatgatggtccagttacggct
attacttgtattgggttctgccactatactgtaatttcatgctcaacagattgcacatgc
aagttgtggagccttttggatggaacaaacctgcgcagaattacatttccatgtgcaatt
tcaaggattgctttggatccaacagggacagaattctatgctgcaggggcagatggtttg
atttataagggatttttgaaagtcggaagcagaaaacaagtgagccccatgcttgaattg
gcgatcttggctgacaaacatggtggagcaatcatatctgtggtgatgatgaatgcgggg
aagaatctggtatctgctgcagaagatgggagggtgtatttgtgggaagttgaaagaggg
caggtgattatggttcttggcaataacatggaaagcataagcgatctagttgtcgccagt
gggatttgtgatgctagaagacaaggtgttagagttggtgaaaacatgaataaatctgtt
ggtggaggtattgtgctatctggaaaagagtttaccagatcagtaaaggatacagtagag
atagaggatgtcttatctgtggcagcaaaagataggagcaaaaccattgatatgctggag
tctgcgattggagtgtacgagagactattggaactcattcttaaggaagccaagggaggc
actagcaggaatagccatgaggacaacggtgacatgtaa
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