Populus trichocarpa (black cottonwood): 18095449
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Entry
18095449 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18095449
KO
K03504
DNA polymerase delta subunit 3
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03030
DNA replication
pop03410
Base excision repair
pop03420
Nucleotide excision repair
pop03430
Mismatch repair
pop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
18095449
03410 Base excision repair
18095449
03420 Nucleotide excision repair
18095449
03430 Mismatch repair
18095449
03440 Homologous recombination
18095449
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pop01009
]
18095449
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pop03032
]
18095449
03400 DNA repair and recombination proteins [BR:
pop03400
]
18095449
Protein phosphatases and associated proteins [BR:
pop01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
18095449
DNA replication proteins [BR:
pop03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
18095449
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
18095449
MMR (mismatch excision repair)
DNA polymerase delta complex
18095449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CDC27
Motif
Other DBs
NCBI-GeneID:
18095449
NCBI-ProteinID:
XP_006370108
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All DBs
Position
1:40632165..40636015
Genome browser
AA seq
511 aa
AA seq
DB search
MSQMETLGILDEIEVLVSDKLQVVSYKWLSRNFMVSSNAAKRLLQEFVNTRGSGFEVVYT
LSGWLKNNPSSYHIRLVSGPKLEEAKQEFNGNCSVQVYSVQACIPKDPAALWNAEFVQAE
ELFKQSFTVDNCLRDNRFCGILNSFVKYNCDGPAATKSMEIPVIQVCQTITAPPSKQTKV
QQSPKVGPPSPNLVNSVKSERNGTGVRDLATKQTVDEEKVSLLPANKKKGQSDKTSSGNG
GSLANLWGRASAKSKPSSAQADNDKHIPNPTVSAEAQISACEEIEIGSSDDEAQGVNFKR
TSNGDSSRKRRVVLDYSDDEFEDAVNLASPELPKGQSSTALVLEKPHFKKQAEDKPVIKV
EKSTEGAPNQLLRDDSSVGEGIDSKTSSLEKIQSDFTFCDAQKDTAAGAAPNSPKRRKVL
KTRIDERGREVTEVVWEGEETETKKVESQDSKKKAENTAVTNTVNNRAPLTKKSPAAGNG
APSNPGSKAGNKKGGNKDPKQGNILSFFKRV
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaaatggaaaccctaggcattctcgatgaaattgaagttcttgtctctgataaa
ctccaagtggtttcatacaagtggttgagtcgaaatttcatggtttcatcgaatgctgca
aaaaggttgcttcaagaatttgttaacacacgcggaagtggattcgaagtagtatacact
ctatccggttggttaaagaacaacccttcaagttaccatataaggcttgtttccggtccc
aaacttgaagaagctaaacaagaattcaatggcaattgctcagttcaggtatatagtgtt
caagcttgcatcccaaaagatccagctgcactttggaatgctgaatttgttcaggcagaa
gagctcttcaagcaatccttcacagttgataattgcttaagagataacagattttgtggg
attcttaattcctttgttaagtacaattgtgatggacctgctgcaaccaaaagtatggaa
atcccagtaattcaagtgtgtcaaactattacagctccaccatctaagcaaaccaaagtt
cagcaaagcccaaaggttggtcctccatctcccaatctggtgaacagtgtcaaaagtgaa
aggaatggaacaggagttcgtgatctggctaccaagcagactgtggatgaagaaaaggtt
tctctcttgcctgccaataagaagaaaggccagagtgataaaacctcttctggaaatgga
ggttcgttggcaaatttgtggggtcgtgcatctgccaagtcaaagccatctagtgcacaa
gctgataatgataagcacattccaaatcctactgtgagtgcagaagctcaaatttctgct
tgtgaagaaattgaaattgggagcagtgatgatgaggctcagggtgtgaattttaagcga
acttctaatggggatagcagtagaaaaaggagggtagttttagattattccgatgatgag
tttgaagatgcagtcaatctagcatcaccagaacttccaaagggccaaagcagtacagcc
ttggttttggagaagccccacttcaagaagcaagcagaagataaaccagtgatcaaggta
gagaaatcaactgaaggagcacctaatcagttgttgagagatgattcttcagttggagaa
ggcattgactctaaaacttcctctttggagaagatccagagtgacttcaccttctgtgat
gctcagaaggatacggctgctggtgctgctccaaactcccccaaaaggagaaaagtgcta
aagacacggattgatgagcgtggaagagaagtaactgaggtagtctgggaaggggaggag
acagaaactaagaaagttgagtcacaggattcgaaaaagaaagcagaaaatactgcagtt
acaaatactgttaacaacagggcacctctgactaagaagtctccagcagcaggaaacggt
gctccgtctaatccaggaagcaaagcagggaacaagaagggagggaacaaggaccctaaa
caaggcaacattctatcattcttcaagagggtttga
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