Populus trichocarpa (black cottonwood): 18095578
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Entry
18095578 CDS
T01077
Name
(RefSeq) protein SPA1-RELATED 3 isoform X1
KO
K26557
protein SPA1-related 3/4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
18095578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
18095578
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
18095578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Pkinase
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_DCAF12
WD40_RFWD3
WD40_like
PK_Tyr_Ser-Thr
WDR90_beta-prop_4th
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
18095578
NCBI-ProteinID:
XP_006370253
UniProt:
U5GXF3
LinkDB
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Position
1:complement(42581910..42588683)
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AA seq
903 aa
AA seq
DB search
MRLFWLTCSPRGVTMEGSSESAWQKSGSYRGFNTSVVTNRNLRSASYNSGFRKETDRVVL
ARQNLKNQAGTLSGVCEDEAAVDHFVQNMEWNDVSLRHWLNKPERSVDEFECLHIFRQIV
EIVNVAHSQGIVVHNVRPSCFVMSSFNHVSFIESASYSDSGSDSLDDGLNRQTVEVKNAS
SFSHDMCQQRSRLQSEDFLPASTPTNALSEASCMQSSSLYAADLPLGEETEENKVLGTRN
VEHEEERKQPFPMKQILLMESSWYTSPEEVAGSPSSCASDIYQLGVLLFELFSPFTSRED
KSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPEPSSRPKMGELLQSEFLNEPRDYLEE
REAAIQLRERIEEQELLLEFLLPMQQRKQDAANKLQGTVSLLCSDIEEVTKHQTFLKKKG
STCKERGEGDHLASNLPPLNIYDIDDSSSLGSRKRFCSGLQILNTEGCDDNLNEGRNSDT
FVESQESPLFRSSRLMKNFKKLESAYFLTRSRPVRPPGKPPFVRNSPVSGDGRGSIVVTE
RSSINSLALKDRFIKGRQSGWISPFLEGLCKYLSYSKLKVKADLKQGDLLNSSNLVCSLS
FDRDGEFFATAGVNKKIKVFECDTIINEARDIHYPVVEMVSRSKLSSICWNRYITSQIAS
SNFEGVVQVWDVTRSQVVTEMREHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQGVS
IGSIKTKANVCSVQFPMDSSRSIAFGSADHRIYYYDLRNSKVPLCTLIGHNKTVSYVKFV
DTTNIVSASTDNTLKLWDLSMGTSRVIDNPLQSFTGHMNVKNFVGLSVSDGYIATGSETN
EVFVYHKAFPMPVLSFKFNNTDPLSGHEMDDAAQFISSVCWRGQSSTLVAANSTGNIKIL
EMV
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttgttctggcttacatgcagcccaaggggggtaaccatggagggctcatctgag
tctgcttggcagaagtctggtagttataggggatttaatacttcagtagtcaccaacagg
aatctaagatccgcatcttacaactctgggtttagaaaggagactgatagggttgttctg
gctcgtcaaaacctaaaaaaccaggctggtactttatctggggtttgtgaggatgaagct
gcagttgaccattttgtccaaaacatggagtggaacgatgttagcttgaggcattggttg
aacaaaccagaacggtctgttgatgaatttgaatgtttgcacatatttaggcaaatagtc
gaaattgtaaatgtggcacattcacagggaattgttgttcacaatgtccggccttcttgc
tttgtcatgtcatcatttaaccatgtctccttcatcgagtccgcttcttactcggattct
gggtctgattctttggatgatggattgaatagacaaactgtggaggttaaaaatgcttct
tctttctcccatgacatgtgccagcagagaagtaggttacaaagtgaagattttctacct
gcatctactccaacaaatgctttatcggaagccagttgcatgcagtccagctcgctttat
gcagcagatttaccattaggggaagaaacagaagaaaataaagtccttggtacgaggaac
gttgaacatgaagaagaaaggaaacaaccatttccaatgaagcaaatattgctgatggag
tccagttggtataccagccctgaagaggttgctggttcaccaagctcttgtgcttcagac
atctaccaattgggagttcttcttttcgagctgttcagcccattcacttcaagggaagac
aagagcagaactatgtctagtctcagacatcgggttcttcctcctcaattgctgctcaag
tggccaaaagaagcttcattttgcttatggttactgcaccctgagccaagtagtcggcca
aaaatgggagaattgctgcaaagcgagtttcttaatgaaccaagagactatttggaagag
cgtgaagcagcaatacagcttagagagagaatagaggagcaggaattgttgctggaattc
cttttaccaatgcaacaaagaaagcaggatgcagctaataagttgcaaggtactgtttct
cttctatgttctgatattgaagaagtcacaaagcatcaaacttttcttaagaaaaaggga
agcacatgtaaagaaagaggagagggtgatcatttagcatcaaatctccctcccctgaac
atttatgatattgacgattcttctagcttgggttcccgaaaacgattttgctcaggtctt
cagattctcaacacagagggatgtgatgataatctcaatgaaggtcggaactcagataca
tttgtagaatcacaggaaagtcctctttttagaagttctcgattgatgaagaactttaag
aaattagagtcagcatattttttgacaagatccagaccagtcaggccaccagggaaacca
ccatttgttagaaattcaccagtaagtggtgatgggagaggttccattgttgtgactgaa
agaagctccataaatagtttagcactgaaggatcggtttattaagggtagacaaagtgga
tggataagtccattcctggagggtttgtgcaagtatctatcttatagtaagttaaaagtg
aaggctgacctgaagcaaggggatttgttgaactcttcaaacctagtctgctctcttagt
tttgaccgtgatggagaatttttcgctacagctggtgtaaataaaaagataaaagtattt
gaatgtgacacaattataaatgaagctcgtgatatccactatcctgttgttgaaatggta
agtaggtcaaagctaagcagcatatgttggaacagatatattacaagccaaattgcttca
agtaactttgagggtgtggtgcaggtatgggatgttacaaggagtcaagtggtaacagaa
atgagagagcatgagaggcgtgtgtggtccattgacttttcatcagcagatccaacaatg
ctggctagtgggagtgatgatggttcagtcaagctatggagtatcaatcagggagtaagt
attggttccatcaaaacaaaagccaatgtctgctctgttcagtttcccatggattctagt
cgttctattgcatttggttcagcagatcatagaatttattactatgatctccgtaactca
aaagttcctctgtgtacattgattggacacaataaaactgtgagttatgtgaagtttgta
gatacaaccaatattgtttctgcttccacggataacacactgaagctctgggatttgtca
atgggcacgtctagggttattgataacccccttcaatccttcacaggccacatgaatgta
aagaacttcgtgggtttgtctgtatcagatggttacattgcaactggctcggaaacaaat
gaggtttttgtctatcacaaggctttccctatgccagtgctgtccttcaagtttaacaac
acggacccgctttctggccatgaaatggatgacgctgcacaatttatttcttctgtctgt
tggcgtggccagtcatctactttggttgctgcaaattctactgggaatatcaaaatcttg
gagatggtttga
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