Populus trichocarpa (black cottonwood): 18095658
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Entry
18095658 CDS
T01077
Name
(RefSeq) cyclic nucleotide-gated ion channel 4
KO
K05391
cyclic nucleotide gated channel, plant
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
18095658
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pop04040
]
18095658
Ion channels [BR:
pop04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
18095658
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Motif
Pfam:
cNMP_binding
Ion_trans
IQ
Motif
Other DBs
NCBI-GeneID:
18095658
NCBI-ProteinID:
XP_024449392
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Position
1:43513846..43520693
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AA seq
684 aa
AA seq
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MASEHQENSNAAQYLQYFTDEDSKSEEDEGEDDEEEEDVEEESPQDCKGMFLNLCGGGSK
RRGWSLGQVLDPRGKWVQEWNRVFLLVCATGLFVDPLFFYVLSISDTCMCLFVDGWFAIT
VTALRCMTDVLYLWNMWLQLKIAKRPHGGGESGGDGERGGSRVAGPCSSALRYLKAKKGF
FFDLFVILPLPQIVLWVGIPSLLQKGSVTLLMNVFLIIFLFQYLPKIHYSVCLLRRMQSL
SGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKEQCIETPGCGLGLLSCK
EPIYYGTTRKVMEKARWAWADNKLARSMCLDSPDKYDYGAYKWTVQLVTNDSRLEKILFP
IFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQL
KMRNIEWWMRKRHLPTGFRQRVRNYERQRWAAMRGVDECEMIRNLPEGLRRDIKYHLCLD
LVRQVPLFQHMDDLVLENICDRVKSLIFTKGETITREGDPVQRMLFVVRGHLQSSQVLRD
GVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLVTLETTEAFGLEAEDVKYVTQH
FRYTFVKERVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRCSSL
GEDRLRLYTALLTSPKPNQEDFDF
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggctagtgagcaccaagaaaactcaaatgctgcacagtacttgcagtattttacagat
gaagacagcaaaagtgaagaagatgaaggtgaagatgatgaagaagaagaagatgtggag
gaggaaagtccacaagattgcaaaggcatgttcttgaatctgtgtggtggtggctctaaa
agaagagggtggtctctaggacaggtgttagaccctagaggcaaatgggttcaggaatgg
aatagggtttttctcctcgtgtgtgccacaggactttttgtggaccctctcttcttctac
gtcctctcaataagcgacacgtgcatgtgcctattcgtcgatgggtggtttgccatcacg
gtcacggctctccggtgcatgactgatgttttgtacttgtggaacatgtggttgcagctg
aaaatagccaagagaccacatggtggtggtgaaagtggtggagatggagaaagaggaggg
tcccgagttgccggcccttgctcctcggctctgaggtacttgaaggctaagaaaggattt
ttctttgatctcttcgttattctgcctctaccccagattgtgttatgggtgggaattcca
tctctgttgcaaaagggatcagtaacgctactgatgaacgtgtttctgatcattttcctc
ttccaatatctcccaaaaatacactattccgtctgcctccttcgacgcatgcaaagtctc
tctggctatatatttggaactgtttggtggggaatcgctctcaacatgattgcttacttt
gttgcatcacatgcagcaggagcatgttggtacttgctgggaattcaaagggctgcaaaa
tgcttgaaagaacaatgcatagaaacaccgggttgtggcctgggattgttgtcttgcaaa
gagcctatttactatggaacaacaagaaaagtgatggagaaggcgagatgggcatgggcg
gataacaagctagcaagatctatgtgcttagacagccctgataaatatgattatggtgca
tataaatggaccgttcagcttgttaccaatgacagcagattagagaagatactctttcct
atcttctggggcctaatgactctcagcacttttgggaacctggagagcacaactgagtgg
ttagaggttgttttcaacatcattgttctaacgagtgggctgctcttggtcaccatgttg
attgggaatatcaaggtgttcttgcatgcaaccacatcaaagaagcaagcaatgcaattg
aagatgaggaatatagagtggtggatgaggaaaaggcacttgcctacggggttccggcag
agagtgcgcaactacgagcggcaacggtgggcagcgatgaggggtgttgatgaatgtgag
atgatccggaacctccctgagggccttaggagggacatcaagtaccatctttgcctggat
ttggtgagacaggtaccactgttccaacacatggatgatttggtcctcgagaacatttgt
gaccgtgtgaagtctctcatcttcacaaagggagaaacaattacaagggagggagatcct
gtccaaagaatgttatttgtagtaaggggacatctccaaagtagccaagttctcagagac
ggtgtcaaaagctgttgcatgctagggcctgggaatttcagtggtgatgagctcttatca
tggtgcctgagaagaccctttatcgaacgtttgccaccatcttcatcaacgttggtcact
cttgaaaccaccgaggcttttggcctagaagctgaagacgtgaaatatgtgacgcaacat
ttcaggtacacattcgttaaggaaagagttaagagaagcgcaaggtattattcacctgga
tggagaacttgggctgctgtggctattcagctggcttggagaaggtataagcatcggtta
acgcttacctcattgtcatttataaggcctagaagacctttgtcaaggtgttcttctttg
ggagaggataggcttaggctttatactgctctcttaacttcaccgaagccgaatcaagaa
gattttgacttttga
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