Populus trichocarpa (black cottonwood): 18095942
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Entry
18095942 CDS
T01077
Name
(RefSeq) DNA polymerase I A, chloroplastic/mitochondrial
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03030
DNA replication
pop03410
Base excision repair
pop03420
Nucleotide excision repair
pop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
18095942
03410 Base excision repair
18095942
03420 Nucleotide excision repair
18095942
03440 Homologous recombination
18095942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pop03032
]
18095942
03400 DNA repair and recombination proteins [BR:
pop03400
]
18095942
Enzymes [BR:
pop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
18095942
DNA replication proteins [BR:
pop03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
18095942
DNA repair and recombination proteins [BR:
pop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
18095942
NER (nucleotide excision repair)
GGR (global genome repair) factors
18095942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
DNA_pol_A_exo1
Motif
Other DBs
NCBI-GeneID:
18095942
NCBI-ProteinID:
XP_006370669
LinkDB
All DBs
Position
1:complement(44953435..44961544)
Genome browser
AA seq
1006 aa
AA seq
DB search
MGITSTTTQISPFRPICPSYFKLSRSCPCFASREGSSRPFSVALHRFWGKIPLQVIDDMQ
KRDEKRRVVSRNSNAPPGLEFTTILRDGTRALWKQESNELLKQKCEYDGSVYSFKYERMD
INAIQTQDKPKSQKQLISRNVGQLVDNKRPNGSSLDDILKESAWNNGSFMQRMENEKQFQ
SSELGHTGIGSNEQVQTKGRPHKLDIRERLTSIYESVLVVDNVTMAKEVVSKLTNQYRHL
IHACDTEVARIDVKEETPIDHGEITCLSIYCGPEADFGHGKSCIWVDVLDGGGRDLLNEF
ALFFEDPDIKKVWHNYSFDNHVIENYGFSVSGFHADTMHMARLWDSSRRLKGGYSLEALT
GDQKVMRGAGSCYKELIGKVSMKTIFGKKKLKKDGSEGKMTIIAPVEELQREEREPWICY
SALDAISTLQLYKSMESELSKMPWNLDGKRVFQKSMFDFYQEYWQPFGEILVRMETEGML
VDRAYLAEVEKVAKAEQEVAANRFRNWACKYCPDAKYMNVGSDTQLRQLLFGGVPNSKDP
LLTLPEDKTFKVPNVDKVIEEGKKTPTKYRNIKLCSIGVDLPIETYTASGWPSVSGVALK
ALAGKISDAVSDANDAAGLQLDDAVLDDSGTMTDEDSNSEGSYVENKVESEYVAGLRRFQ
TPEEGIEACHAIASLCEVCSIDSLISNFILPLQSSDISGKGGRVHCSLNINTETGRLSAR
RPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD
FHSRTAMNMYPHIREAIEKKQVLLEWYPQPGENKPPVPLLKDAFASERRKAKMLNFSIAY
GKTPVGLSRDWKVSVAEAKETVNLWYKERKEVLKWQQARKKEARENGRVYTLLGRARVFP
SLTDASSSLRGHVERAAINTPVQGSAADVAMCAMLEISKNTRLQELGWKLLLQVHDEVIL
EGPTESAEVAKAIVVGCMSKPFGGKNFLNVDLAVDSKCAQNWYAAK
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atgggaatcacctccaccaccactcaaatcagtccttttagaccaatatgcccttcttat
ttcaagttatctcgctcttgtccttgctttgcctccagggaaggttcttctaggcctttc
tctgttgcccttcacaggttttgggggaaaatccctttgcaagtgattgatgacatgcaa
aagagagatgagaagaggagggtggtttcaagaaattctaatgcgcctcctggtcttgag
ttcactacgatccttcgtgatggtactagagctttatggaaacaggagagtaatgaactg
ttgaagcagaaatgtgaatatgatggtagtgtttattcatttaaatatgaaaggatggat
attaatgcaatacaaacacaagataaacctaagagtcagaaacaactaatttccaggaat
gttggtcagctggttgataacaaaaggccaaatggttcatctttggatgacattttaaaa
gagagtgcgtggaataatggatcattcatgcagagaatggagaatgaaaagcagttccag
tctagtgaacttggacacacaggtattggttcaaatgagcaagtccagaccaagggaagg
cctcacaagctagacattcgtgagaggcttactagtatatatgagagtgtactggttgtt
gataatgtcactatggcaaaggaggttgttagtaagcttacaaatcagtataggcatctt
atccatgcttgcgatactgaggttgccagaattgatgtgaaagaggaaacacccattgac
catggagagataacatgtctcagtatttattgtggaccagaggcagattttggacacggg
aaatcttgtatctgggtagatgttcttgatggtggaggcagggatcttttgaatgaattt
gctctgttttttgaagacccggacataaaaaaggtgtggcacaactacagctttgataac
cacgtcatcgagaactacgggttttctgtttctggttttcatgctgatacaatgcacatg
gcacgattatgggattcatcaagaagattaaagggtgggtattctcttgaagctcttaca
ggtgatcaaaaagtcatgcgtggggcaggatcatgctataaagaattgattggtaaagtg
tcaatgaaaaccatctttggcaagaaaaagttgaaaaaagatggatctgaaggcaaaatg
accatcattgcccctgttgaagagttacaaagagaagagcgagaaccgtggatttgttat
tctgctttggatgcaataagcactttgcagctttataagagcatggaaagcgaactatct
aaaatgccttggaatttggatggaaaacgtgtttttcaaaaatctatgtttgacttctac
caggaatactggcaaccatttggggagattctagttagaatggaaaccgagggcatgctg
gttgaccgggcatatcttgctgaggtggagaaggttgccaaagcagaacaggaggttgct
gctaacagatttcgtaattgggcttgtaagtattgccctgatgccaagtacatgaatgtg
ggaagtgatacacaactgcgccaattactttttggtggtgttccgaacagtaaggatcct
ctccttactcttccagaagataaaacattcaaagttccaaatgttgataaagtgattgaa
gaaggcaagaagactcccacaaaatatcgcaacattaagttatgtagcattggagttgat
ctgcctattgagacatataccgcaagtggttggccttcagtcagtggagttgctttgaag
gccttggctgggaagatttctgatgctgttagcgatgccaatgatgctgctggcttgcag
ttagatgatgctgtcttggatgattctgggacaatgacagatgaagattcaaattccgaa
gggtcctatgttgagaataaagtagaatctgagtatgtagcaggtttgcgtaggtttcaa
acaccagaagaagggattgaggcctgtcatgctattgcttctttatgtgaagtttgctct
attgattctttgatatccaacttcatcctccccctgcagagcagcgacatatcaggcaag
ggtgggcgtgttcactgttctctgaatatcaatacagaaaccgggcgcttatcagctagg
agaccaaatttgcagaatcagcctgctttggagaaagaccggtataagatccgtcaggca
tttatagctgcacctgggaattcacttattgttgctgattatgggcaactggaacttagg
attcttgcacatcttgccaactgtaagagcatgttggatgcctttaaagctggtggagat
ttccattcaaggacagctatgaacatgtatccgcatattcgtgaggccattgagaaaaag
caagtgcttcttgagtggtatcctcaacctggtgaaaacaaaccccccgttccattactt
aaggatgcctttgcttctgaaagaagaaaagctaaaatgcttaacttttctattgcttat
ggaaagactcctgtggggctttccagggattggaaggtttctgtggcggaagcaaaggaa
actgttaatctctggtataaagaaagaaaagaagtgcttaaatggcaacaagctcgtaag
aaagaagccagagaaaatggacgtgtttacacattgctgggacgggctcgtgtctttcct
tcattgactgatgctagctcttctctaagaggtcatgttgagcgggctgctatcaatacc
ccagtgcagggtagtgctgcagatgttgctatgtgcgctatgctagaaatatcaaagaac
acacgtctgcaggaacttggatggaagctgcttttacaggttcatgatgaagtgatcctg
gaaggaccaactgagtcagctgaggttgccaaggcaatagttgttgggtgcatgtctaaa
ccctttggtggcaagaattttcttaatgtggacctggctgttgattcaaagtgtgctcaa
aactggtatgctgctaaatag
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