Populus trichocarpa (black cottonwood): 18095971
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Entry
18095971 CDS
T01077
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 32
KO
K14776
ATP-dependent RNA helicase DDX10/DBP4 [EC:
5.6.2.7
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pop03009
]
18095971
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
18095971
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
90S particles
Helicases
18095971
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
18095971
NCBI-ProteinID:
XP_006370699
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All DBs
Position
1:complement(45143662..45148924)
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AA seq
766 aa
AA seq
DB search
MRKSKPKSKQTRRDRHEAEQEEISKLNQWIDSQKPDSGTNPLSLPPLPKDAPIGPLQDDK
FSRYSGATMFKELPLSKRTQDGLKRANFSKMTDIQRASLPHSLCGRDILGAAKTGSGKTL
AFIIPILEKLYKERWGSEDGVGGIIISPTRELAGQLFDVLKTVGKFHNFSAGLLIGGRKE
VEMEKEHVNALNILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDVGFKKTLNAIV
AQLPKRRQTLLFSATQTKSIQDLARLSLKDPEYISVHEDAETATPSRLQQTAMIVPLEQK
LDMLWSFVKAHLNSKILVFLSSCKQVKFVFEAFKKLRPGIPLKCLHGRMKQEKRMGIYSQ
FCESHSVLFSTDVASRGLDFNKAVDWVVQVDCPDDVASYIHRVGRTARYLAGGRSVLFLM
PSEMKMLEKLQTAKIPVQFIKANTKRLQPVSGLLSALLVKYPDMQQLAQRAFITYLRSIH
IQKDKEVFDVLKLSIEEFSASLGLPMTPKVRFLNQKIKGKKAFGKSALLESEDSEKEDAA
EIPGEKLDIGNFREESVGRLKENLKIGDSEEENVEKGFLQTKNALNGSEAKTGEIEDLVP
ATRVLKKKKLKINVHRPVGTRVVFDEEGNTLPPLARVADRKNVANSSLLDQDKREEYYKN
MREQMKHVDKEDKVLDRQRRREKRIKEKMKRKIGSMGLEEDGEGEDDLSGSEGEGRKHKR
SKIYFDSDSDNAEMTESKDNAGISTDSISLADQEALALKLLSSMHS
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaatcaaaaccaaagtctaaacaaacaagaagggatcgtcatgaagcagaacag
gaagaaatctccaagctaaaccaatggatagactcacaaaaaccagactcagggaccaac
cctttatcactcccaccactaccaaaagatgcaccaattgggccccttcaagatgataaa
ttttcaagatattcaggggctacaatgttcaaggaattgcctttgtcaaagagaacgcaa
gatgggttaaagagagcgaatttttctaaaatgactgatatacaaagggcttctttgcct
cattctctttgtggaagggatattcttggtgctgctaaaactgggtctggcaaaacactc
gcttttattattcctattttggaaaaattatataaagaaagatggggttccgaggatgga
gtaggcggcatcattatctctcccacaagggaattagcagggcagctttttgatgtattg
aaaactgttgggaagttccataactttagcgctggactactcattggtggtcgaaaggaa
gtggaaatggagaaagagcatgttaatgctctgaacatattagtttgcactcctggaaga
cttcttcagcatatggacgagactccaaattttgattgttcacagcttcaggttttggtc
cttgatgaggcagatcgtattcttgatgttggatttaagaagactctgaatgcaattgtc
gcacagctacctaagcgtagacaaacattgcttttctctgcaactcaaacaaagtccatt
caggatcttgcaagactgagtttgaaggacccagagtatatcagtgtgcatgaagatgct
gagacagcaactcccagccgcctgcagcaaactgcaatgattgttcctcttgagcagaag
ctagatatgctatggagttttgtaaaagctcatcttaactcaaagattcttgtgtttctt
tctagctgcaaacaggtgaaatttgtctttgaagcatttaagaaactacggcctggaatc
ccattgaagtgtctccatggaaggatgaagcaggagaaaaggatgggaatttattctcag
ttctgcgaaagtcattcagttctcttctcaactgatgtagcctccagaggccttgatttt
aataaggcagttgactgggttgtccaggtagattgtccagatgatgttgcatcctacata
cacagggttggtcgcacagcacgctatctggctggaggaaggtcagttttgtttctgatg
ccttcagaaatgaaaatgcttgaaaaattgcaaacagcaaaaattcccgtacagtttatt
aaggcaaatacaaaaagactgcagccagtttctggattgttgtcagctttactagtcaag
tatcctgatatgcagcagctagctcagagggccttcataacatatttgcgatctatacat
atacagaaggacaaagaagtgtttgatgttttgaagctatctattgaagaattttcagct
tcattgggtctacctatgaccccaaaagtccgttttctgaaccagaaaataaaagggaaa
aaggcatttggaaaatctgctcttctcgaatcagaagattctgaaaaggaggatgctgca
gagataccaggtgagaagcttgatatcggtaacttcagggaagaaagtgtgggcagacta
aaagagaatctaaagattggtgattcagaggaagagaacgtggaaaaaggttttcttcaa
acgaagaatgctctaaatgggagtgaagcaaaaacaggcgaaattgaagatcttgtgcca
gcaacacgagttttgaagaaaaagaagttgaagatcaatgtccatagaccggtagggaca
agggttgtctttgatgaagaaggcaatacacttcctccacttgcaagagtggctgataga
aagaatgttgctaattcatctctgcttgaccaagacaaaagagaagaatactataaaaac
atgagggaacaaatgaagcatgtggacaaggaagataaagttttagatcgccagcgccgc
cgagagaaacggattaaggaaaagatgaagaggaaaataggatctatgggtttagaggag
gatggagaaggcgaggatgatctctctggttcagaaggagagggcagaaagcataaaaga
tcaaagatatattttgatagtgatagtgataatgccgagatgacagaaagtaaagataat
gcaggcataagtaccgattccatttcacttgcagaccaagaagctcttgccctgaagttg
ttgagttctatgcactcatag
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