Populus trichocarpa (black cottonwood): 18096000
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Entry
18096000 CDS
T01077
Name
(RefSeq) nuclear pore complex protein NUP98A isoform X2
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
18096000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18096000
03036 Chromosome and associated proteins [BR:
pop03036
]
18096000
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
18096000
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
18096000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
PilN
Motif
Other DBs
NCBI-GeneID:
18096000
NCBI-ProteinID:
XP_006370735
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Position
1:47998853..48005749
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AA seq
1062 aa
AA seq
DB search
MFGASNPFGQSSNSPFGTTQPVFGQASNVSSGPFALKPFGSPTTPFGAQTGSSIFGGTST
GMFGAPQTSSFSATNAFGSSTPAFGASTTPAFGSSSSSAFGGSSVFGQKPFGGFGSTTQT
SPFGNTNQQPQPGFGSTTQTSPFGNTNQQPQPGFGNTNQQPQPGFGSTTQTSPFGNTNQQ
PQPGFGNTNQQPQPGFGNNSLFGSTPFGAPSQSAFGAASTPAFGTTTAPAFGATSTTPAF
GSTSTTPAFGAPSTTPAFGSTATPGFGSTGASYTSSPLFGAGGAFGTSTSVFGSSATTPA
FGGLTGSGFGTPTTSAFGATTTSAFGATSSPSFTFSSSPGFGQSTSTFGSSPFGSTTSTF
PAQPSPFGAQPTTSAFGNTGFAQPGFGGHRPGTRAAPYAETAEAEGGAQAGKLVSISAMP
AYKDKSHEELRWEDYQLGDKGGPLPPGQSPGGAGYSMSTPQANPFAPSTGLGQTSTNMFS
STATNLFAPKTQTSTPSFTTASPFGPSTSSNLFQPSTPAFSVGSSPSLFGSTSMPNFSTT
PSLFSSTTGQGNASPFGSNMFNNTQSSLSFPSTTPSMGQTTAFPQSNPFGPSTTSSLFNS
PATGGLFSSTQSQITPNLGGFNQMTPSQPAQNAGIFSLNFSQTQAAGNSGFAGVSSNFGQ
PFTTQNAVAVQPVPITNPFGTLPAMPQVSFGRAGTTPSVQYGISTMPVVEKPSPIRISSL
LTSRHLSQRRIRLPMRKYYPKHDGPKVPFFSDEEETPSTPKADALFIPRENPRALVIRPM
DQWPSRESAEKASPLNASAPVHENGKFSVSEDACPSNGSTAGDKNKNSAENGVIKEQVKV
NQKPNGVHEDHATQKEESYMTLSGHRAGEAAIVYEHGADIEALMPKLRRSDYFTEPRIQE
LAAKERARPGFCRHVKDFVVGRHGYGSIKFLVETDVRRLDLESLVQFNNREVIVYMDDSK
KPPVGQGLNKPAEVTLLNIKCIDKKTGRQFTEGPKIERYKEMLKRKAEDQGAEFVSYDPV
KGEWKFKVNHFSKYMLEDEGEEDWDVVQATCNKVDDCLVLKE
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgtttggtgctagcaatccttttgggcagtcttctaatagtccgtttgggacgacacag
ccggtttttggtcaggctagtaatgtaagtagtggtccttttgctctgaaaccctttggt
agtccaacaactccttttggtgcacaaacagggagttccatatttgggggcacttctact
ggtatgtttggtgcaccccaaacttcttcattctctgccacaaatgcttttggtagctca
acgcctgcttttggagcatctactacccctgcatttggtagttcgtcatcatcagcattt
ggtggttcttctgtttttggtcagaagcccttcggaggctttgggtctaccactcaaaca
agtccatttggaaacacaaatcaacagccacagccaggctttgggtctaccactcaaacg
agtccttttggaaacacaaatcagcagccacagccaggctttggaaacacaaatcagcag
ccacagccaggctttgggtctaccactcaaacaagtccgtttggaaacacaaatcagcag
ccacagccaggctttggaaacacaaatcagcagccacagccaggctttggaaacaatagt
ttatttggttcaacaccttttggtgcgccatctcagtctgcatttggtgctgctagtact
ccagcctttggtacgacgactgccccagcctttggtgccacaagcaccactccagccttt
ggttccacaagcaccactccagcctttggcgccccaagcaccactccagcctttggctca
acagcaactccaggttttggtagtacaggagcttcctataccagttcgccactgtttgga
gctggtggagcttttggaacttccacttcagtttttggatcttcagctactacacctgct
tttgggggtttgactggttctggctttggcactccaaccacttctgcctttggggctaca
actacttctgcctttggggctacatcttccccatcctttacgttttcatcaagtccaggt
tttggccaatcaacttctacttttgggagcagcccatttggaagtactacatctactttt
cctgcccagccttctccctttggagctcagcctacaacatcagcatttggaaacactggc
tttgcccagccagggtttggggggcaccgtcctggaactagagcagcaccttatgcagaa
actgctgaggcagaaggtggtgcacaggctggaaaattagtgtcaatatcagccatgcct
gcctacaaagataaaagccatgaagagctaaggtgggaggactatcaattgggagacaaa
ggtggaccgcttcctcctggtcaatctcctggtggggctggatatagcatgtctacccca
caggcgaatccttttgctccttcaactggacttggtcaaacatctacaaatatgttttct
tcaacagccacaaacctgtttgctccaaaaactcaaacatctacaccttcattcaccacc
gcctccccttttggcccttcaacgtcatccaacctctttcagccatcaacacctgcattc
tcagttggttcatctccatctctttttggatcaacaagcatgcctaattttagtacaaca
ccatccttgtttagttctactacaggccaaggaaatgcttcaccatttggttccaatatg
tttaataacactcaatcatctctctcattcccatctaccacaccttcaatggggcagaca
actgcatttccacagtccaatccatttggaccaagtaccaccagttccttgttcaatagc
cctgctactggcggccttttctcaagcactcaatctcagataactccaaaccttgggggg
tttaatcaaatgactccatctcaaccagctcagaatgcaggtattttttccttgaacttc
agtcagacacaagcagctggtaacagtggctttgctggtgtatcaagtaattttggacaa
ccgtttaccacacaaaatgctgttgctgtacaaccagtgcctattacaaatccatttgga
acacttcctgcaatgcctcaagtgtcctttggtcgagctggaactacaccttcagttcaa
tatggaatctccactatgcctgttgttgagaaaccctctcccattagaatatcatcttta
ttgacttctaggcacttgtcacagaggaggatcaggttgcccatgaggaaatattatcct
aagcatgatggaccaaaggttccatttttcagtgatgaagaagaaacacccagcacaccg
aaggcagatgctcttttcattccaagggaaaacccaagagctctagtcattcgtcctatg
gaccagtggccttcaagggaaagtgcagagaaagcatctccattgaatgcatcagcacct
gtacacgagaacggaaaattttcagtatcagaagatgcttgtccctcaaatggttccact
gctggtgataaaaataaaaattcagctgagaatggtgtaatcaaggagcaagttaaagtc
aaccagaaacctaatggagtccatgaggatcatgcgactcagaaagaggagtcctacatg
acacttagtggtcacagagctggtgaggctgcaattgtgtatgagcatggagcggatatt
gaggcactaatgccaaaactccgacgttctgactatttcaccgagcctcgtatccaggaa
ctggcagccaaggagagggctagaccgggattctgccgacatgttaaggattttgtggtt
ggaaggcatggctatggaagcatcaagttcctggttgaaacagatgttcgaaggcttgat
cttgagtcccttgttcagtttaataaccgtgaagttatcgtgtacatggatgatagcaag
aaaccgcctgtcggacagggtctcaacaagcctgctgaggtaacacttctcaacataaaa
tgcatcgacaaaaagactggacggcagttcacagaaggaccaaaaatcgagagatacaag
gagatgctcaaaagaaaagctgaagaccaaggcgccgaatttgtttcttatgaccctgtt
aaaggagagtggaagttcaaggtcaaccatttcagcaagtacatgctggaggatgaaggg
gaggaggattgggatgttgtgcaagctacctgtaataaagttgatgactgcttggtactg
aaggagtga
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integrated database retrieval system
