Populus trichocarpa (black cottonwood): 18096204
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Entry
18096204 CDS
T01077
Name
(RefSeq) replication factor C subunit 2
KO
K10755
replication factor C subunit 2/4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03030
DNA replication
pop03410
Base excision repair
pop03420
Nucleotide excision repair
pop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
18096204
03410 Base excision repair
18096204
03420 Nucleotide excision repair
18096204
03430 Mismatch repair
18096204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pop03032
]
18096204
03036 Chromosome and associated proteins [BR:
pop03036
]
18096204
03400 DNA repair and recombination proteins [BR:
pop03400
]
18096204
DNA replication proteins [BR:
pop03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
18096204
DNA Replication Termination Factors
ELG1-RFC complex
18096204
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
18096204
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
18096204
Check point factors
HRAD17(Rad24)-RFC complex
18096204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCF1-5-like_lid
Rep_fac_C
AAA_assoc_2
DUF3853
Motif
Other DBs
NCBI-GeneID:
18096204
NCBI-ProteinID:
XP_024449077
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All DBs
Position
2:5634088..5638520
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AA seq
143 aa
AA seq
DB search
METFSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEITSSRILHICNEEGLTLDGEA
LSTLSSISQGDLCRAITYLQGAARLFGSSISSEDLISVSGAIRQEVTEALYEACKSGDFD
LANKEVNNIIAEGYPVSQILAQA
NT seq
432 nt
NT seq
+upstream
nt +downstream
nt
atggaaactttctccaaagttacaagattcttcttcatatgtaattacatcagcaggatc
atagagccacttgcgtcaagatgtgcaaaattcaggttcaagccactttcagaagaaatc
acaagcagtcgtatattgcacatttgtaatgaagaaggcctcactctggacggagaggct
ctctcaaccttgagttctatctcacaaggtgatctttgccgggctatcacatacttgcaa
ggagctgctcgcctatttggatcgtcaatttcatccgaagaccttataagtgtatctggg
gccattcggcaagaggttactgaggcactttatgaagcatgcaaaagtggtgactttgat
ttggcgaacaaggaagtcaataatataattgcggaaggatatccagtatctcagatcctt
gctcaggcatga
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