Populus trichocarpa (black cottonwood): 18096212
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Entry
18096212 CDS
T01077
Name
(RefSeq) SWI/SNF complex subunit SWI3C isoform X3
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
18096212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
18096212
03036 Chromosome and associated proteins [BR:
pop03036
]
18096212
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
18096212
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
18096212
PBAF complex
18096212
GBAF(ncBAF) complex
18096212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
RGS
ZZ
Motif
Other DBs
NCBI-GeneID:
18096212
NCBI-ProteinID:
XP_006386367
LinkDB
All DBs
Position
2:complement(5676529..5682768)
Genome browser
AA seq
796 aa
AA seq
DB search
MPASPSFPASDGRGKWKRRKRGDSQITRKPPKHHHQEEPEEPEDDDDAVEADDHNNNIVY
REDSEDPNPHQQPNGPDPNPQETEVLTDGGVRICDFPPVTRLAVNRPHASVMAIVAAERF
NLAGESSNRGQLTLNLENVSYGQLQAVSAVTAESVGSDLERSDGGNSGYVVTPPQIMDGK
GVVKRFWSRLHVVPMHSDWFSPLSVNRLERQVVPHFFSGKSLDHTPEKYMECRNRIVAKY
MENPEKRLTVSDCQGLVVSIDIEDLTRIFRFLDHWGIINYCAAPPSCESWSGGSYLREDP
NGEVHVPSASLKSIDSLIQFDKPRCRLKAADVYSSFSCHGDDFSDLDNRIRECLSENCCN
CCSQPLPSVFYQSQKEVDILLCSDCFHEGRFVTGHSSLDFVKVDSTKDYGDIDGENWSDQ
ETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPVEDGLLENIEVPRMSKPPSPS
SRDDSRRPHSSSNGSCLRSADAENRLPFANSGNPVMALVAFLASAVGPRVAAACAHASLA
ALSEDNRMDSERLHGREGGFHGEVANSIQQKEDGQHGSRGQNGAEVVPLSSEKVKAAAKA
GLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETFLMRECEQVEKTR
QRFAAERVRMLSTRIGPAGVTSQVNPAGVAPSMVNNNVGNNRQQVMPSSSSQPSIPGYGN
SNPTHPHNNQQVHPHMSYLQRGHPQPMFPLGPRLPMAAIQPSSSAPSNVMYNAPGNSQPN
LNQMPRSVSGPSSGLG
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttccccttctttccctgcttcagatggaaggggcaaatggaaaaggcgaaag
cgaggagactctcaaatcactcgaaaaccaccaaagcaccaccaccaagaagaacctgaa
gaacccgaagacgacgacgacgcggttgaggcagacgaccataacaataacatcgtctac
agagaagattccgaagacccgaacccacatcagcaacccaacggacccgatccaaaccct
caagagaccgaggttttaactgacggcggggtccgcatatgcgatttccctccggtcact
cggcttgctgtgaaccgccctcatgcgtctgtgatggcgattgtggcggccgagaggttc
aatttagctggagaaagcagtaatagaggccaattaactttgaatctggagaatgtatcg
tacgggcagctgcaggcggtgtctgctgtgacagcggagagtgttgggagtgatttggag
aggagtgatggagggaattcggggtatgtagtgacgccgccgcagattatggatggaaag
ggtgtcgtgaagaggttttggagtagattacatgtggttccgatgcattcagattggttt
tcaccgctctcggttaatcgactggagagacaggtggtgccacattttttctctggaaaa
tctttagatcacacaccagagaaatacatggagtgtagaaaccgcattgttgctaaatat
atggagaatccagagaagaggctcacagtttctgattgtcaaggattggtagtcagtatt
gacattgaagatttaactcgaatttttagatttcttgatcattggggaattatcaactac
tgtgcagctccaccaagttgcgaatcctggagtggggggtcctatttaagggaggatcca
aatggtgaggttcatgtaccgtcagcttccttaaagtctattgatagtttgatccaattt
gacaagcccagatgtaggctcaaggcagctgatgtttattcatcattttcatgtcatggt
gatgatttctctgacctggacaacagaattagagagtgcttatctgaaaattgctgcaat
tgttgttctcagcctcttccctctgttttctaccagtcacaaaaggaggttgatatacta
ctatgctctgattgcttccatgaggggagatttgtgactggtcattcaagcttagatttt
gttaaggtagattcaacaaaagattatggtgatatagatggagaaaattggagtgatcag
gaaacattacttctccttgaggcaatggagatttacaatgagaattggaatgaaattgca
gaacatgttggaaccaagtcaaaagcacaatgcatccttcactttctgcgtctgcctgta
gaggatggcctgttggaaaatattgaagttccaagaatgtccaagccacccagtccatct
agtagagatgatagcagaagaccacactcaagttcaaatggatcctgcctccgaagtgct
gatgctgaaaataggctaccttttgcaaattctggcaatccagttatggcattggttgct
tttctggcctctgctgttggaccaagagttgctgcagcctgtgctcatgcatctttggca
gcattgtctgaggataacaggatggattcagagagattacatggtagagaaggtggtttt
catggagaagttgcaaattcaattcaacaaaaagaagatggccagcatggctcacggggt
caaaatggggccgaggttgttccattgtcttctgaaaaagttaaagctgctgccaaagct
ggccttgctgctgcagcaacaaaggctaaactgtttgctgatcatgaagagcgggaaatt
cagagactatctgccaatatcataaatcatcagttgaagagactggagcttaagctgaag
cagtttgctgaagtggaaacctttctaatgagagagtgcgagcaagtggagaagacaagg
caacggtttgctgctgagcgggtccgcatgctatctacccggataggacctgctggagtc
acttcacaagtgaacccagctggtgttgctccttcgatggttaacaataatgtgggcaac
aataggcagcaggtgatgccttcctcctcttcacaaccaagcattccaggatatggcaac
agtaatccaacccatccgcacaacaatcaacaagtccatcctcacatgtcatatttgcaa
cggggacatccccagccaatgtttccattagggccgaggctgcccatggcagctatacag
ccatcctcgtccgctccatcgaatgtcatgtacaacgcccctggaaattcacagcctaac
ctcaatcaaatgccgagatctgtgtcaggccctagttctggcttaggttga
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