KEGG   Populus trichocarpa (black cottonwood): 18096320
Entry
18096320          CDS       T01077                                 
Name
(RefSeq) protein mago nashi homolog
  KO
K12877  protein mago nashi
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03013  Nucleocytoplasmic transport
pop03015  mRNA surveillance pathway
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18096320
  09122 Translation
   03013 Nucleocytoplasmic transport
    18096320
   03015 mRNA surveillance pathway
    18096320
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    18096320
   03041 Spliceosome [BR:pop03041]
    18096320
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     18096320
Spliceosome [BR:pop03041]
 Complex C
  Other components
   EJC/TREX
    18096320
SSDB
Motif
Pfam: Mago_nashi
Other DBs
NCBI-GeneID: 18096320
NCBI-ProteinID: XP_024450456
LinkDB
Position
2:10399899..10401923
AA seq 152 aa
MAATEGDNGEFYLRYYVGHRGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTP
AVLKECRRIISESEIMKEDDNNWPEPDRVGKQELEIVMGNEHISFTTSKIGSLVDVHSSQ
DPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI
NT seq 459 nt   +upstreamnt  +downstreamnt
atggcagcgacggagggagataacggagagttctaccttcgttactacgtaggtcacaga
ggtaaattcggtcacgaattcctggagttcgagttccgtccagatggcaagctccgatac
gccaacaactctaactacaaaaacgacaccatgattcgcaaagaagtcttccttaccccc
gccgtcctgaaagagtgccgccgcatcatctccgagagcgagattatgaaggaagatgac
aacaactggccagagccagaccgggttgggaaacaggagctggagattgtgatggggaat
gagcatatttcttttactacatcgaagattggatcacttgttgatgttcacagtagccag
gatcctgaagggcttcgcatcttctattatcttgtccaggacttgaagtgctttgttttc
tctctcatctctctccacttcaaaatcaagcccatataa

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