Populus trichocarpa (black cottonwood): 18096320
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Entry
18096320 CDS
T01077
Name
(RefSeq) protein mago nashi homolog
KO
K12877
protein mago nashi
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
pop03015
mRNA surveillance pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18096320
09122 Translation
03013 Nucleocytoplasmic transport
18096320
03015 mRNA surveillance pathway
18096320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18096320
03041 Spliceosome [BR:
pop03041
]
18096320
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
18096320
Spliceosome [BR:
pop03041
]
Complex C
Other components
EJC/TREX
18096320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mago_nashi
Motif
Other DBs
NCBI-GeneID:
18096320
NCBI-ProteinID:
XP_024450456
LinkDB
All DBs
Position
2:10399899..10401923
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AA seq
152 aa
AA seq
DB search
MAATEGDNGEFYLRYYVGHRGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTP
AVLKECRRIISESEIMKEDDNNWPEPDRVGKQELEIVMGNEHISFTTSKIGSLVDVHSSQ
DPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI
NT seq
459 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgacggagggagataacggagagttctaccttcgttactacgtaggtcacaga
ggtaaattcggtcacgaattcctggagttcgagttccgtccagatggcaagctccgatac
gccaacaactctaactacaaaaacgacaccatgattcgcaaagaagtcttccttaccccc
gccgtcctgaaagagtgccgccgcatcatctccgagagcgagattatgaaggaagatgac
aacaactggccagagccagaccgggttgggaaacaggagctggagattgtgatggggaat
gagcatatttcttttactacatcgaagattggatcacttgttgatgttcacagtagccag
gatcctgaagggcttcgcatcttctattatcttgtccaggacttgaagtgctttgttttc
tctctcatctctctccacttcaaaatcaagcccatataa
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