Populus trichocarpa (black cottonwood): 18096402
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Entry
18096402 CDS
T01077
Name
(RefSeq) endoribonuclease Dicer homolog 1 isoform X2
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
18096402
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
18096402
microRNA pathway
RISC loading complex
18096402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
DEAD
DND1_DSRM
dsrm
Helicase_C
ResIII
Dicer_dsRBD
Dicer_PBD
SWI2_SNF2
SNF2-rel_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
18096402
NCBI-ProteinID:
XP_006386668
UniProt:
U5GLQ5
LinkDB
All DBs
Position
2:complement(14369368..14381051)
Genome browser
AA seq
1969 aa
AA seq
DB search
MESESNGRVSGIGGGGGPSYWLDACEDISCDIIDDFVDFDTSIVPELSVDNNSNVNNDFF
GGIDHILDSIKNGSGLPPLHNASTTANVSNGNRDCIVGDGWFINVENGVCHGSSVSQSNG
GDKDNIDRKGQVENGGNGLNLSNGKREERFSNNFVKENGKKDEQSTEQGIDGDERCGKRA
RLCCYRNERVYSSRGQHEHRDRERCSSRKRSRDWDESDRRDRDISRRRDRYSGSNRRDGR
DRDWRERELRGYWERDRSGSKDMVFRLGTWEADHNKEGREANDKIQECKGELEKKSEESK
EKVPEEQARQYQLDVLDQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKILAVF
LVPKVPLVYQQAEVIRERGYQVGHYCGEMGQDFWDTRRWQREFETKQVLVMTAQILLNIL
RHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVS
SQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPAEVVVEYDKAASLWSLHEQIKQIE
AAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALG
DLGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLERVVLLLQCQLTEGAVTDKDTKV
SDNGNDNIQDGPGFDEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKVLLR
YQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVRCASLIGHNNSQEMRTSQMQDTIAK
FRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERG
NLSHGAFLRNARNSEETLRKEAIERTDLSHLKDTSRLIAVDSIPGTVYQVESTGAVVSLN
SAVGLVHFYCSQLPSDRYSILRPGFIMEKHEKPGGPTEYSCKLQLPCNAPFEELEGPVCS
SMRLAHQAVCLAACKKLHEMGAFTDMLLPDKGSEEEKDKVDQNDEGEPLPGTARHREFYP
EGVAKTLQGEWILCGRDGCNNSKVLHLYLYGVRCLNIGTSNDPFLTQVSNFAVLFGNELD
AEVLSMSMDLFIARTMITKASLVFRGRIPITESQLASLKNFHVRLMSIVLDVDVEPSTTP
WDPAKAYLFVPMVSDKSVDPIKEIDWDLVENIIGTDAWSNRLQRARPDVYLGTNERTLGG
DRREYGFGKLRHGIAFGQKPHPTYGIRGAVAQFDVVKASGLIPKRGWDATETQKLELTKG
KLMMADTCVNADALMGRIVTAAHSGKRFYVDSICYDMTAEISFPRKEGYLGPLEYSSYAD
YYKQKYGVELKFKQQPLLRGRGVSYCKNLLSPRFEHSDSNEGDAEENLDKTYYVFLPPEL
CLVHPLPGSLVRGAQRLPSIMRRVESMLLAVELKDIINYPVPASKILEALTAASCQETFC
YERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALNKGLQSYIQA
DRFAPSRWAAPGVLPVFDEETKDGDSYIFDQEKSLAEDRTGMNHLDDGYENEIEDGELES
DASSYRVLSSKTLADVVEALIGVYYVEGGKNAVNHLMKWIGIQVEFDHEEIDGASRPFNV
PESVLRSVDFDTLEGALDIKFNDRGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLIT
RHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALEKQIRDFVREVQ
DELLKPVFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPET
LPMHPVRELQERCQQQAEGLEYKATRSGNLATVEVFIDGVQVGVAQNPQKKMAQKLAARN
ALVVLKEKETAEAKEKSDENGKKKRNGNQTFTRQTLNDICLRRNWPMPSYRCVNEGGPAH
AKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKRYS
NT seq
5910 nt
NT seq
+upstream
nt +downstream
nt
atggagagcgagagtaatggtagggtttcggggattggaggtggaggtggtccgtcttac
tggcttgatgcatgtgaggatatttcttgtgatattatagatgattttgttgattttgat
acttcaattgttccagaattatctgttgataataattccaatgttaataatgatttcttt
ggagggattgatcacattcttgatagtatcaagaatggtagtggtcttcctcctcttcat
aatgctagtacgacagctaatgtttccaatggaaatcgggattgcattgttggtgatggt
tggtttattaatgttgaaaatggagtttgccatgggagctcggtttcacaatcaaatggt
ggtgataaggacaatattgacagaaaagggcaggtggagaatggtggtaatgggttgaat
ttgtccaatgggaagagagaagagaggttctcaaacaattttgttaaagaaaatgggaag
aaggatgagcagtcgacggagcaaggtattgatggtgatgaaaggtgcggtaaaagggct
agactttgttgttatagaaatgagagagtgtattctagtagagggcagcatgagcatagg
gatagggagagatgttctagcaggaagaggtcacgggattgggatgaaagcgatagaagg
gatagggatattagtcgaagaagagatagatatagtggtagtaataggagggatggtaga
gatagggattggagggaaagagaacttaggggttattgggagagggatcgttcagggtcc
aaagacatggttttccgattgggcacttgggaagctgatcataacaaagaaggaagggag
gcaaatgacaaaattcaggagtgcaaaggagagctagagaagaaatcagaggagagtaaa
gagaaagtccctgaagaacaggcccgccagtatcaattggatgttcttgaccaggctaag
aagaaaaatacaatagcttttcttgaaacaggggcagggaagacactcattgctgtactc
ctcatcagaagcatttgcaatgacttgcaaaggcagaataaaaaaattctagctgtattt
ttagttccgaaggttccacttgtttatcagcaagcagaagttattcgtgagcgcggttac
caagtgggccattattgtggtgagatgggtcaagatttctgggatactcgaagatggcag
cgtgagtttgaaacaaaacaggttttagtaatgacagcccaaattcttttgaacattctg
aggcacagcataatcaaaatggaagccataaatctcctcattctggatgagtgtcatcat
gctgtgaagaaacatccatattctcttgtgatgtctgagttttaccatacgactcccaag
gagaagagaccgtctgtttttggaatgacagcttctcctgttaacttaaagggtgtttca
agtcaggtggattgtgcaataaagatccgcaatcttgaaagtaaactggactcaattgtt
tgtacgataaaagaccgcaaggaactggaaaagcatgtaccaatgccggcagaggttgtg
gtggagtacgacaaagcagctagcttgtggtcccttcatgaacaaataaagcaaatcgaa
gcagctgttgaggaagctgcacagtctagctcgagaagaagtaaatggcaatttatggga
gctagggatgctggggccaaggaagagctgcgccaggtttatggtgtctctgaaagaaca
gaaagtgatggggctgctaacttaattcaaaagttgagggcaattaattatgcacttggt
gatctgggtcagtggtgtgcttacaaggttgcacaatcctttctgactgccttacaaaat
gacgagagagcaaactatcagcttgatgttaagtttcaagaatcctacctcgaaagagtc
gtgttgctcttacaatgccaattaacagagggagctgttacagacaaggatacaaaagtt
tcagacaatgggaatgacaatattcaggatgggcctggttttgatgagattgaggaggga
gagctccctgacagtcatgttgtctctggtggagaacatgttgatgtgataataggagct
gctgtagctgatggaaaagtgacccctaaagtgcagtcactgattaaagtacttctcaga
tatcagcacacggaggattttcgtgcgatcatctttgttgagcgcgtagtagctgctttg
gttcttcctaaggtctttgcagagcttccatctctaagttttgttaggtgtgcaagtttg
atagggcacaataatagtcaggaaatgagaacaagccaaatgcaagacacaattgccaaa
tttcgagatggtcgtgtgacattgttagttgctaccagtgttgctgaggaaggacttgat
attaggcaatgcaatgttgttattcgctttgatcttgcaaaaactgttcttgcatatatt
cagtctcgaggtcgtgcaagaaagccaggctctgattacatcttgatggtggagagggga
aacctgtctcatggagcattcttaaggaatgctaggaatagtgaggagaccctgaggaaa
gaagcgattgagagaactgacctcagtcatcttaaggatacttcaaggttaattgcagta
gattcaataccaggaactgtgtatcaggtggagtctactggtgctgttgtgagcttaaat
tctgctgttggacttgttcatttctattgctctcagttacccagtgacaggtattcaata
cttcgtcctgggtttattatggagaagcatgagaagccaggaggtcccacggaatattca
tgcaagcttcagcttccttgtaatgcaccatttgaggagcttgagggtcctgtatgcagt
tcaatgcgccttgcacatcaggctgtttgtttggctgcttgcaagaagcttcatgagatg
ggagcatttactgacatgctcttgccagacaagggaagtgaggaagaaaaggacaaggtt
gaccagaatgatgaaggtgaaccacttcctggtactgctaggcatcgggagttctatcct
gaaggtgtagctaagacactccagggagaatggatcttatgcggaagggatggttgcaac
aactccaaagtgcttcatctctacttgtatggagtcagatgcttaaacattggcacttca
aatgatccattcttgactcaagtttcaaattttgcagtgctttttggcaatgagctggat
gcagaggtcttatcgatgtcgatggatctatttatcgctcgaaccatgataacgaaggca
tctcttgtctttaggggtcgcatacctattacagaaagtcagctggcatcccttaaaaat
tttcatgtaaggttgatgagcattgtactggatgtggatgttgaaccttccaccactcca
tgggatcctgcaaaagcttatttattcgtccctatggttagcgataagtctgtagatcct
ataaaagaaattgactgggatctggttgaaaatataattggaacagatgcttggagcaat
cgtcttcagagagctcgaccagatgtttaccttggtacaaatgagaggacacttggtgga
gacaggagggagtatggttttgggaaattgcgacatggaattgcttttggacagaaacct
catcccacttatggcatcaggggagctgtagcacagtttgatgttgtgaaagcttctgga
ttgattcctaagaggggatgggatgcaactgagacgcaaaaactggagctgaccaaaggc
aaattgatgatggctgatacttgtgtcaatgctgatgctttgatggggagaattgtaaca
gctgctcactctgggaagaggttttatgtggattccatatgctatgatatgactgcagag
atctcatttccaagaaaagagggttatcttggtcctctggagtacagctcatatgctgat
tactacaagcaaaagtatggagttgaattgaaatttaagcagcagcctttactaagagga
cgtggtgtttcatactgcaagaatctcttatctcctcggtttgaacactcagattcaaat
gaaggcgatgctgaagagaatcttgacaagacttactatgtgtttcttcctcctgagctg
tgtctggtgcaccctcttcctggatcacttgttcgaggtgcccagagattaccatcgata
atgaggagggttgaaagcatgctgctcgctgttgaacttaaggatataataaattatcca
gtccctgcttcaaagatcttggaagccttgactgctgcttcatgccaagagacattctgc
tatgaaagagcagagcttctaggagatgcttacctgaaatgggtggttagtcgatttctt
tttctgaagtatccccagaaacatgagggtcaacttactagaatgaggcaacaaatggta
agtaatatggttttgtatcaatatgcacttaacaaaggacttcagtcatatatccaagca
gatcgctttgctccatctcgatgggctgctcctggagtgttgcctgtctttgatgaggaa
acaaaagatggagactcgtacatatttgatcaggagaagtcacttgctgaggatagaacc
ggaatgaatcatcttgatgatgggtatgaaaatgaaattgaagatggtgaacttgagagt
gatgctagttcttacagagtcctctctagcaagacattggcagatgttgttgaagcatta
attggtgtttattatgttgaaggtgggaaaaatgctgttaaccaccttatgaaatggatt
ggaattcaggtagagtttgatcatgaagagatagatggtgcatctaggccattcaatgtt
ccagaaagtgttcttaggagtgttgactttgatactttagaaggtgccttggatattaag
ttcaatgatcgtggcttgttgatagaagccataacgcatgcttcacgaccatcttctgga
gtatcctgctatcaacgattagaatttgttggtgacgcagtcttagatcatcttattact
aggcacttgttttttacatatacaaatctgcccccaggtcgcctgacagacttgcgagcc
gctgctgtaaacaatgaaaattttgcacgtgttgcagttaaacataagcttcatgtgcac
cttagacatgggtcaagtgcccttgaaaagcagattcgggactttgttagggaagttcaa
gatgaactattgaagccagtgttcaactcctttggtttgggagattgcaaagctccaaag
gttcttggtgacatcgttgaatccattgctggtgctatttttcttgacagcggacgagat
acagcggttgtgtggaaggtttttcaacctctgttgcatccaatggtcactccagaaacc
ctgccaatgcatcctgtaagggagctgcaggaacggtgccagcaacaggctgaaggattg
gaatacaaagccactcgaagtggcaatttggctactgttgaagttttcattgatggtgtt
caggtaggagttgcccaaaatccacaaaagaaaatggcacagaaactcgcagctaggaat
gcacttgttgttttgaaagagaaggaaacagctgaagccaaggaaaagagtgatgaaaat
gggaagaagaaaaggaacggcaaccaaacctttactagacaaacattaaatgatatctgc
ttgcgtagaaattggcctatgccatcatatcggtgtgtcaatgagggtggtcctgcacat
gcaaagaggtttacttttgcagttcgtgtgaatactaccgatagaggatggacagacgaa
tgtgtgggagagccgatgccgagtgttaagaaggccaaagactctgctgcagttcttctc
ttggaactattaaataaacggtactcatga
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integrated database retrieval system
