Populus trichocarpa (black cottonwood): 18096589
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Entry
18096589 CDS
T01077
Name
(RefSeq) auxin response factor 1 isoform X2
KO
K14486
auxin response factor
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
18096589
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Motif
Pfam:
Auxin_resp
B3
AUX_IAA
Motif
Other DBs
NCBI-GeneID:
18096589
NCBI-ProteinID:
XP_006385188
UniProt:
U5GHK9
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Position
3:406241..413031
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AA seq
660 aa
AA seq
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MNHTSGGNPHPGGCNDALYKELWHACAGPLVTLPCEGERVYYFPQGHMEQLEASMHQGME
QQMPSFNLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPDQSEVTSPDPPLPEPERCTV
HSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFR
GQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQTNMPSSVISSQS
MHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVNLNKYIEAQNHKLSVGMRFKMRFEGE
EVPERRFSGTIVGVGDNISSGWADSEWRSLKVHWDEPSSILRPERVSPWDLEPLVATTPS
NSQPMQRNKRPRPSVLPSPTANLSALGMWKPSVESSAFSYGESQRGRDPYPSPNFSTTAK
ANSLSFCGNSQVTSVSPNSMYRPNQVESVTDSFAPVVNKDLGERRQGTGIGYRLFGIQLI
DNFNAEGTSPVVTVSGTVGNDRPVVSLEAESDQHSEPEKSCLRSHQELQSRQIRSCTKVH
MQGVAVGRAVDLTQFEHYEDLLRKLEEMFDIEGELSGSTKKWQVVYTDNEDDMMKVGDDP
WHEFCSMVKKIFIYASEEVKRLSPKIKLSGDEEIKGDSANANADASVNTEDRSSVVGPGC
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatacctccggaggaaacccccatccagggggatgcaatgatgctttgtacaaa
gaactatggcatgcctgtgctggacctcttgtcactcttccttgtgaaggggagcgagtt
tattattttcctcaaggtcacatggaacagcttgaagcatcaatgcatcaggggatggag
cagcaaatgccctcatttaaccttccatctaaaattctgtgtaaagtggttaatgttcag
cgcagggctgaacctgaaacagatgaagtttatgcccagataacactgcttcctgaacca
gatcaaagcgaggttactagtcctgatcctccactcccagaacctgaaagatgcacggtc
cattcattttgcaagacacttactgcttctgacacaagcactcatggtggtttctctgtt
cttcgaaggcatgcagatgattgtctgcctcctttggacatgtctcagcagccaccttgg
caggagttggttgcaactgatctgcatggcaatgagtggcattttcgacacatttttcga
ggtcaaccaaggcgtcacctgctcacaacagggtggagtgtctttgttagctcaaaaaag
ttagttgcgggtgatgcattcatcttcctaaggggagaaaatggcgagcttcgtgtggga
gtaaggaggctcatgaggcaacagacaaatatgccatcttctgttatatctagccaaagc
atgcatctaggggttcttgctactgcttctcatgccattgcgactggaacccttttttct
gtcttctacaagccaagaacaagtaggtctgagttcattgtaaatcttaacaagtatatt
gaagctcaaaaccacaagctttctgtagggatgaggtttaagatgagatttgagggtgag
gaagttcctgaacgaaggtttagtggcaccattgttggcgttggagataatatatcatcg
ggatgggctgattctgagtggagatcattaaaggtccattgggatgaaccttcttccatc
ttgcgtccagagagagtatcaccatgggatttggaacctcttgttgcaactactccttcg
aactcccaacctatgcagaggaacaagcggccacggccatctgtcttgccctcaccaaca
gccaatctttctgcacttggtatgtggaaaccttcggttgagtcttcagctttctcatat
ggtgaatcacaacgtggacgagacccttatccatcacccaatttctctaccactgcaaag
gccaactctcttagcttctgtggcaatagtcaagtgaccagtgtttcgccgaattcaatg
tatcggcctaaccaagtggaaagtgtcacagattcttttgctccagttgtaaacaaagat
ttgggagaaaggagacagggtactgggattggctacagacttttcgggattcaacttatt
gacaatttcaatgcagaaggaacttcaccagtggttactgtgtctggaacagtgggcaat
gatcgcccggttgtctctttagaggctgagtctgatcagcattctgagcctgagaaatca
tgtctgagatctcatcaggagttgcaaagtaggcaaatcaggagctgcacaaaggttcac
atgcaaggcgttgctgttggaagagctgttgatttgacacagtttgaacactatgaagac
ctgctgaggaagctggaggagatgtttgatatcgaaggtgagctcagtggatccacgaag
aaatggcaggttgtgtatactgataatgaagatgacatgatgaaggttggggatgatcca
tggcatgagttctgcagcatggtgaagaagatttttatctatgcatctgaagaagtcaag
aggctgtcacccaagattaaactttcaggtgatgaagagatcaaaggagatagtgccaat
gctaatgccgatgcatctgttaacacagaggaccgctcatctgtcgttgggcctggatgc
tga
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