Populus trichocarpa (black cottonwood): 18096628
Help
Entry
18096628 CDS
T01077
Name
(RefSeq) partner of Y14 and mago isoform X2
KO
K14294
partner of Y14 and mago
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
18096628
03015 mRNA surveillance pathway
18096628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18096628
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
18096628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mago-bind
bAvd
Allexi_40kDa
Motif
Other DBs
NCBI-GeneID:
18096628
NCBI-ProteinID:
XP_006385222
LinkDB
All DBs
Position
3:complement(2236098..2241027)
Genome browser
AA seq
213 aa
AA seq
DB search
MADLSKTLEEGERIVTPSRRPDGTLRKPIRIRAGYTPQDEVAVYQSKGALWRKETQTQEV
PPGYDPVVPTKPKTKSVKRNERKKDKRLQAAVEKGKNSEAMEDGNMEKGALPAEDLGCAS
ESFESLASQMNELAVSSNSSVDLADSSNMESQLQDIDKRIRALKKKIRLAEAQQQKTMSQ
EMKPEQMEKLTKLEGWRQELKLLEVKNAEEASS
NT seq
642 nt
NT seq
+upstream
nt +downstream
nt
atggcagacttaagcaaaaccctagaagaaggggagagaattgtgactcccagcagacga
cctgacggtacccttagaaaacccattcggattcgggctggttataccccccaagacgaa
gtcgccgtctaccaatccaaaggggccctgtggagaaaggaaacgcagactcaggaagtt
cccccgggttatgatcctgttgttcctacaaagccaaaaactaagtctgttaaaaggaat
gaaagaaagaaggataagcggcttcaggctgcagttgaaaagggcaaaaactctgaagcc
atggaagatgggaacatggaaaagggagcgctacctgctgaagatttaggctgtgcatct
gaatcttttgaatcattggcatctcagatgaatgagctagctgtttcttcaaattcctct
gtagacctggcagattcttcaaatatggaatctcagcttcaagatattgataagagaatt
cgggctcttaaaaagaagattcgactagcagaagctcagcagcagaaaactatgtcacag
gaaatgaagccagagcaaatggagaagttgacaaaattggaaggttggcgccaagagctg
aagcttttggaggttaaaaatgccgaagaggcatcgtcatga
DBGET
integrated database retrieval system
