Populus trichocarpa (black cottonwood): 18096633
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Entry
18096633 CDS
T01077
Name
(RefSeq) serine/arginine-rich splicing factor SC35 isoform X2
KO
K12891
serine/arginine-rich splicing factor 2/8
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18096633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
18096633
Spliceosome [BR:
pop03041
]
Common components
Common spliceosomal components
SR proteins
18096633
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
18096633
NCBI-ProteinID:
XP_024448838
LinkDB
All DBs
Position
3:complement(2482853..2486208)
Genome browser
AA seq
252 aa
AA seq
DB search
MSHFGRSGPPDIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFA
FVRYKYADEAQKAVERLDGRVVDGREITVQFAKYGPKAERIHKGRIVETPSKSRHRSRSR
SPRRRDRDSRKRSRSRSRDRDRSDRDRYRAKDKDYRRRSRSRSASPDYSRGRGRSRYDDE
RRSSSRSRDSLSPRRSLEPRRSFSPRKNSPVKGESPDRRSRDGGSPTPRSASPRGRPAAS
RSPSPRNSDVDE
NT seq
759 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacttcggcaggtctggccctccagacatcgccgacacatactctcttctcgtc
ctcaacatcaccttccgtactactgctgatgatctgtttccgctattcgacaagtacggc
aaggttgttgacatcttcatccctagagatcgaagaactggggaatcgaggggctttgca
tttgtgcgctacaaatacgctgatgaagctcagaaggcagtggaaaggctagatgggagg
gttgttgatggtcgcgaaataacagttcagtttgcaaaatatgggcccaaggctgagagg
attcataagggaaggattgttgaaacgccttcaaaatcaaggcacaggtccagaagtcgc
agccctcggagaagagatagggactctaggaagagaagtaggagcagaagcagggacagg
gacaggtctgaccgtgacaggtaccgtgcaaaggacaaagattatcgtagacggagcagg
agtcgcagtgccagtcctgattactccagaggacgtggtagaagccgttatgatgatgag
cggcgaagtagcagccgatctagggatagtctctcccctcggcggagcctggaacctcga
aggagtttttccccacgtaagaattcccctgtgaaaggtgaaagccctgatagacgcagc
cgtgatggtgggtctccaacccctcgaagtgcttctccacgaggtcggcctgctgcgtct
cgtagcccatccccgcgaaattcagatgttgatgaatga
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